Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 C 1.50706 * 109.47028 * 240.00204 * 2 1 3 5 5 H 1.08002 * 119.99679 * 239.99914 * 4 2 1 6 6 C 1.37872 * 119.99967 * 60.00427 * 4 2 1 7 7 N 1.31512 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47129 * 89.99593 * 8 6 4 10 10 H 1.48502 * 109.47158 * 209.99536 * 8 6 4 11 11 H 1.48502 * 109.47187 * 329.99373 * 8 6 4 12 12 C 1.52996 * 109.47441 * 120.00103 * 2 1 3 13 13 H 1.09001 * 110.37360 * 56.79063 * 12 2 1 14 14 C 1.53748 * 110.42732 * 179.16582 * 12 2 1 15 15 N 1.46806 * 105.05136 * 118.73268 * 14 12 2 16 16 C 1.39582 * 110.11672 * 0.09605 * 15 14 12 17 17 C 1.39666 * 129.32182 * 179.97438 * 16 15 14 18 18 C 1.37828 * 120.28204 * 179.97438 * 17 16 15 19 19 C 1.38295 * 120.23139 * 0.03098 * 18 17 16 20 20 C 1.38230 * 119.83428 * 359.97438 * 19 18 17 21 21 C 1.38167 * 120.15044 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47184 * 307.42393 * 1 2 3 23 23 H 1.08998 * 109.47362 * 187.41603 * 1 2 3 24 24 H 1.09008 * 109.47154 * 67.41770 * 1 2 3 25 25 H 0.97002 * 120.00156 * 180.02562 * 7 6 4 26 26 H 1.09001 * 110.30082 * 237.69562 * 14 12 2 27 27 H 1.09005 * 110.30050 * 359.83677 * 14 12 2 28 28 H 0.96999 * 124.93196 * 180.02562 * 15 14 12 29 29 H 1.08005 * 119.85979 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.88860 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.08442 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.92827 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 6 2.0400 -0.7212 1.2492 13 1 1.6389 -1.7338 1.2931 14 6 3.5771 -0.7522 1.2609 15 7 3.9640 -0.0181 2.4719 16 6 2.8265 0.4236 3.1495 17 6 2.7310 1.1534 4.3365 18 6 1.4962 1.4945 4.8452 19 6 0.3420 1.1160 4.1841 20 6 0.4282 0.3934 3.0088 21 6 1.6636 0.0500 2.4943 22 1 -0.3633 0.6245 0.8161 23 1 -0.3634 -1.0190 0.1326 24 1 -0.3634 0.3947 -0.9489 25 1 0.7082 1.1610 -3.4844 26 1 3.9343 -1.7809 1.3098 27 1 3.9721 -0.2558 0.3745 28 1 4.8773 0.1364 2.7598 29 1 3.6285 1.4525 4.8576 30 1 1.4298 2.0594 5.7633 31 1 -0.6243 1.3849 4.5846 32 1 -0.4722 0.0974 2.4911 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261016951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = 24.720845 kcal Electronic energy + Delta-G solvation = -14458.433655 eV Core-core repulsion = 12190.326911 eV Total energy + Delta-G solvation = -2268.106743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.84350 -35.96669 -34.24435 -31.78593 -29.52619 -28.69220 -27.32359 -24.98848 -22.48489 -21.35303 -20.99019 -19.18582 -16.89524 -16.29287 -15.09741 -14.96938 -14.71679 -14.00241 -13.36149 -13.18375 -12.87175 -12.42052 -12.02206 -11.70951 -11.38352 -11.02854 -10.99660 -10.82261 -10.67464 -10.31360 -10.07702 -9.81242 -9.57055 -9.31395 -8.70701 -8.31769 -8.13417 -6.74646 -5.96571 -4.04759 1.98788 2.14510 3.29988 3.37207 3.39057 3.98094 4.39039 4.45997 5.28686 5.33170 5.47565 5.56544 5.67337 5.93287 6.02727 6.04497 6.11964 6.48285 6.52432 6.75255 6.83906 6.91907 7.02005 7.06693 7.21648 7.24257 7.27777 7.44157 7.73721 7.76324 8.02157 8.18002 8.37751 8.46205 8.98987 9.60010 11.08097 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.008464 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.998531 B = 3307.367403 C = 3719.303101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 H 0.026 0.974 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.045 4.045 13 H 0.073 0.927 14 C 0.125 3.875 15 N -0.750 5.750 16 C 0.192 3.808 17 C -0.195 4.195 18 C -0.088 4.088 19 C -0.184 4.184 20 C -0.063 4.063 21 C -0.143 4.143 22 H 0.018 0.982 23 H 0.021 0.979 24 H 0.083 0.917 25 H 0.259 0.741 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.402 0.598 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -0.746 10.309 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.044 0.956 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.064 4.064 13 H 0.091 0.909 14 C 0.002 3.998 15 N -0.381 5.381 16 C 0.088 3.912 17 C -0.218 4.218 18 C -0.107 4.107 19 C -0.204 4.204 20 C -0.081 4.081 21 C -0.147 4.147 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.238 0.762 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.264 -0.725 10.007 10.286 hybrid contribution 0.739 -0.341 -0.794 1.137 sum 3.003 -1.066 9.214 9.749 Atomic orbital electron populations 1.21936 0.98690 0.97826 1.01584 1.18650 0.92755 0.95420 0.89052 0.95553 1.21204 1.31170 1.12257 0.90571 0.92614 1.24956 0.95156 0.94955 0.98901 1.69896 1.36631 1.22868 1.23227 0.86656 0.79229 0.79436 0.83017 1.20734 1.21332 1.19978 1.20871 0.92864 0.98796 0.93827 0.90893 1.22018 0.96059 0.94945 0.86777 1.44964 1.04978 1.61475 1.26649 1.18446 0.87881 0.93048 0.91813 1.20183 0.97720 1.06586 0.97292 1.20579 0.92029 0.99115 0.98957 1.20746 0.97729 1.04337 0.97571 1.20567 0.96539 0.96485 0.94550 1.20238 0.92276 1.04032 0.98182 0.96338 0.95999 0.89857 0.93055 0.93037 0.89982 0.76189 0.87470 0.86944 0.86894 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.36 37.15 0.31 -3.14 16 2 C 0.06 1.48 1.77 -91.77 -0.16 1.32 16 3 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.51 -13.63 7.57 -34.44 -0.26 -13.89 16 5 H 0.06 1.43 7.43 -52.49 -0.39 1.04 16 6 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 7 N -0.89 -25.29 11.29 55.43 0.63 -24.67 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C -0.04 -0.95 2.56 -91.13 -0.23 -1.18 16 13 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 14 C 0.13 2.37 6.98 -3.49 -0.02 2.35 16 15 N -0.75 -12.70 6.54 -57.93 -0.38 -13.08 16 16 C 0.19 3.52 7.03 -83.66 -0.59 2.93 16 17 C -0.19 -3.13 10.07 -39.20 -0.39 -3.53 16 18 C -0.09 -1.33 10.02 -39.71 -0.40 -1.73 16 19 C -0.18 -2.93 10.06 -39.56 -0.40 -3.33 16 20 C -0.06 -1.15 8.74 -39.61 -0.35 -1.49 16 21 C -0.14 -2.83 5.47 -104.26 -0.57 -3.40 16 22 H 0.02 0.40 5.33 -51.93 -0.28 0.12 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 2.24 5.91 -51.92 -0.31 1.93 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.69 7.12 -51.93 -0.37 1.32 16 28 H 0.40 5.55 8.96 -40.82 -0.37 5.19 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.12 2.18 6.24 -52.49 -0.33 1.85 16 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -28.60 258.62 -8.17 -36.77 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.13 Total: 4.67 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -3.16 Total: -23.51 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.25 Total: -37.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.60 -8.17 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.490 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds