Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 C 1.50706 * 109.47028 * 240.00204 * 2 1 3 5 5 H 1.08002 * 119.99679 * 239.99914 * 4 2 1 6 6 C 1.37872 * 119.99967 * 60.00427 * 4 2 1 7 7 N 1.31512 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47129 * 89.99593 * 8 6 4 10 10 H 1.48502 * 109.47158 * 209.99536 * 8 6 4 11 11 H 1.48502 * 109.47187 * 329.99373 * 8 6 4 12 12 C 1.52996 * 109.47441 * 120.00103 * 2 1 3 13 13 H 1.09001 * 110.37360 * 56.79063 * 12 2 1 14 14 C 1.53748 * 110.42732 * 179.16582 * 12 2 1 15 15 N 1.46806 * 105.05136 * 118.73268 * 14 12 2 16 16 C 1.39582 * 110.11672 * 0.09605 * 15 14 12 17 17 C 1.39666 * 129.32182 * 179.97438 * 16 15 14 18 18 C 1.37828 * 120.28204 * 179.97438 * 17 16 15 19 19 C 1.38295 * 120.23139 * 0.03098 * 18 17 16 20 20 C 1.38230 * 119.83428 * 359.97438 * 19 18 17 21 21 C 1.38167 * 120.15044 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47184 * 307.42393 * 1 2 3 23 23 H 1.08998 * 109.47362 * 187.41603 * 1 2 3 24 24 H 1.09008 * 109.47154 * 67.41770 * 1 2 3 25 25 H 0.97002 * 120.00156 * 180.02562 * 7 6 4 26 26 H 1.09001 * 110.30082 * 237.69562 * 14 12 2 27 27 H 1.09005 * 110.30050 * 359.83677 * 14 12 2 28 28 H 0.96999 * 124.93196 * 180.02562 * 15 14 12 29 29 H 1.08005 * 119.85979 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.88860 * 180.02562 * 18 17 16 31 31 H 1.08005 * 120.08442 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.92827 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 6 2.0400 -0.7212 1.2492 13 1 1.6389 -1.7338 1.2931 14 6 3.5771 -0.7522 1.2609 15 7 3.9640 -0.0181 2.4719 16 6 2.8265 0.4236 3.1495 17 6 2.7310 1.1534 4.3365 18 6 1.4962 1.4945 4.8452 19 6 0.3420 1.1160 4.1841 20 6 0.4282 0.3934 3.0088 21 6 1.6636 0.0500 2.4943 22 1 -0.3633 0.6245 0.8161 23 1 -0.3634 -1.0190 0.1326 24 1 -0.3634 0.3947 -0.9489 25 1 0.7082 1.1610 -3.4844 26 1 3.9343 -1.7809 1.3098 27 1 3.9721 -0.2558 0.3745 28 1 4.8773 0.1364 2.7598 29 1 3.6285 1.4525 4.8576 30 1 1.4298 2.0594 5.7633 31 1 -0.6243 1.3849 4.5846 32 1 -0.4722 0.0974 2.4911 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261016951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = 8.261418 kcal Electronic energy + Delta-G solvation = -14459.147389 eV Core-core repulsion = 12190.326911 eV Total energy + Delta-G solvation = -2268.820478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.25312 -37.42491 -35.99607 -33.60469 -31.08739 -30.04051 -28.94952 -27.03126 -23.91962 -23.01813 -22.36015 -20.88095 -18.42425 -18.14534 -16.72844 -16.37232 -16.29606 -15.62597 -14.76545 -14.72381 -14.55218 -14.16765 -13.43736 -13.20057 -13.14182 -12.84175 -12.69469 -12.58149 -12.27288 -12.04912 -11.81642 -11.70149 -11.17310 -10.89257 -10.65076 -10.40165 -9.50035 -8.13930 -8.01486 -6.19664 0.66728 0.83609 1.42983 1.43852 1.53339 2.45097 2.65570 3.09039 3.22423 3.92490 4.04831 4.32508 4.36786 4.37638 4.65528 4.73900 4.80422 4.87438 4.99833 5.06446 5.18603 5.28287 5.38595 5.43297 5.58950 5.65296 5.77147 5.88282 5.92197 6.00609 6.16100 6.38099 6.44586 6.92180 7.15652 7.48560 8.99335 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.008464 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.998531 B = 3307.367403 C = 3719.303101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 H -0.016 1.016 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.265 1.265 12 C -0.043 4.043 13 H 0.068 0.932 14 C 0.131 3.869 15 N -0.743 5.743 16 C 0.175 3.825 17 C -0.194 4.194 18 C -0.081 4.081 19 C -0.184 4.184 20 C -0.080 4.080 21 C -0.179 4.179 22 H 0.033 0.967 23 H 0.027 0.973 24 H 0.053 0.947 25 H 0.259 0.741 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.417 0.583 29 H 0.135 0.865 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -0.930 11.976 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.046 3.954 3 H 0.002 0.998 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.189 1.189 12 C -0.061 4.061 13 H 0.087 0.913 14 C 0.007 3.993 15 N -0.376 5.376 16 C 0.071 3.929 17 C -0.216 4.216 18 C -0.100 4.100 19 C -0.204 4.204 20 C -0.099 4.099 21 C -0.183 4.183 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.256 0.744 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.942 -0.914 11.696 12.095 hybrid contribution 0.495 -0.225 -1.218 1.334 sum 3.438 -1.139 10.477 11.086 Atomic orbital electron populations 1.21787 0.98534 0.98214 1.00496 1.18507 0.92887 0.93308 0.90748 0.99773 1.21561 1.30869 1.12316 0.91462 0.92108 1.25756 0.95441 0.95682 1.01977 1.70047 1.37886 1.24340 1.23717 0.85638 0.79050 0.78249 0.79212 1.20245 1.21395 1.18895 1.20671 0.94303 0.98212 0.92964 0.91334 1.21795 0.94627 0.95956 0.86931 1.44803 1.05658 1.61356 1.25802 1.18703 0.87525 0.93816 0.92825 1.20582 0.99440 1.05301 0.96315 1.21068 0.91128 0.97984 0.99772 1.21106 0.99625 1.03127 0.96526 1.20716 0.95898 0.97445 0.95806 1.20283 0.93762 1.05928 0.98376 0.94786 0.95382 0.92822 0.93216 0.91116 0.92269 0.74374 0.84711 0.83064 0.84183 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.36 71.98 0.60 -6.01 16 2 C 0.06 3.28 1.77 -11.54 -0.02 3.26 16 3 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 4 C -0.52 -28.36 7.57 25.60 0.19 -28.16 16 5 H 0.06 3.15 7.43 -2.91 -0.02 3.13 16 6 C 0.01 0.53 5.28 84.65 0.45 0.97 16 7 N -0.92 -53.95 11.29 21.45 0.24 -53.71 16 8 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 C -0.04 -1.83 2.56 -11.12 -0.03 -1.86 16 13 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 14 C 0.13 4.96 6.98 86.57 0.60 5.56 16 15 N -0.74 -24.36 6.54 -337.19 -2.20 -26.57 16 16 C 0.18 6.17 7.03 38.34 0.27 6.44 16 17 C -0.19 -5.62 10.07 22.52 0.23 -5.39 16 18 C -0.08 -2.14 10.02 22.19 0.22 -1.92 16 19 C -0.18 -5.38 10.06 22.28 0.22 -5.15 16 20 C -0.08 -2.87 8.74 22.25 0.19 -2.68 16 21 C -0.18 -7.05 5.47 -19.63 -0.11 -7.16 16 22 H 0.03 1.53 5.33 -2.39 -0.01 1.52 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 2.98 5.91 -2.38 -0.01 2.97 16 25 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.49 7.12 -2.38 -0.02 2.47 16 28 H 0.42 10.81 8.96 -92.71 -0.83 9.98 16 29 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.12 4.16 6.24 -2.91 -0.02 4.15 16 Total: -1.00 -62.29 258.62 3.18 -59.11 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.29 Total: 17.87 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 2.83 Total: -42.09 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.96 Total: -80.28 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.29 3.18 -59.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.368 kcal (2) G-P(sol) polarization free energy of solvation -62.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds