Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76199 * 103.00374 * 2 1 4 4 N 1.36503 * 126.00984 * 359.97274 * 3 2 1 5 5 H 0.97002 * 125.90924 * 0.04261 * 4 3 2 6 6 N 1.40063 * 108.18478 * 180.02562 * 4 3 2 7 7 C 1.32965 * 108.14100 * 0.02562 * 6 4 3 8 8 C 1.41390 * 126.05462 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00575 * 180.02562 * 8 7 6 10 10 C 1.39803 * 119.99767 * 359.74898 * 8 7 6 11 11 N 1.30924 * 120.00126 * 0.27904 * 10 8 7 12 12 Si 1.86798 * 120.00354 * 180.27332 * 10 8 7 13 13 H 1.48504 * 109.46986 * 60.00490 * 12 10 8 14 14 H 1.48498 * 109.47594 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47124 * 300.00556 * 12 10 8 16 16 C 1.35631 * 126.01775 * 180.29903 * 3 2 1 17 17 Cl 1.73596 * 126.09875 * 0.02562 * 16 3 2 18 18 H 1.09002 * 109.46804 * 299.99803 * 1 2 3 19 19 H 1.08997 * 109.47146 * 59.99579 * 1 2 3 20 20 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 21 21 H 0.96996 * 120.00480 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 7 1.3151 2.7472 -0.0005 5 1 0.3489 2.6614 -0.0004 6 7 2.0329 3.9499 -0.0009 7 6 3.3301 3.6579 -0.0012 8 6 4.3930 4.5903 -0.0021 9 1 5.4158 4.2434 -0.0027 10 6 4.1200 5.9614 -0.0082 11 7 2.8802 6.3821 -0.0074 12 14 5.5242 7.1933 -0.0172 13 1 6.3553 6.9878 -1.2306 14 1 4.9730 8.5722 -0.0220 15 1 6.3606 6.9994 1.1944 16 6 3.4588 2.2471 -0.0057 17 17 4.9485 1.3559 -0.0150 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 2.6908 7.3333 -0.0113 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261022757.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = 53.027914 kcal Electronic energy + Delta-G solvation = -10463.824930 eV Core-core repulsion = 8300.173595 eV Total energy + Delta-G solvation = -2163.651335 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.998 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.14917 -35.24841 -33.48904 -30.30219 -28.73794 -28.26714 -25.72468 -21.00227 -19.60493 -17.73805 -16.26111 -15.39984 -14.65682 -13.91493 -13.53599 -13.29812 -13.15643 -12.91938 -12.24378 -11.14930 -11.11179 -10.85204 -10.73654 -10.32330 -10.22873 -9.67922 -9.54529 -8.67077 -8.58673 -7.71603 -6.67718 -6.46418 -4.42629 1.79641 2.57642 2.85779 3.13771 3.19446 3.23270 3.35790 4.10367 4.17189 4.61526 5.09851 5.10262 5.50661 5.65869 6.48361 6.61750 7.16471 7.41690 8.18045 8.47044 8.74200 9.02442 9.58296 10.50514 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.046078 B = 0.009908 C = 0.008190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.520574 B = 2825.433709 C = 3417.801956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.075 6.075 3 C 0.055 3.945 4 N -0.516 5.516 5 H 0.418 0.582 6 N -0.305 5.305 7 C 0.230 3.770 8 C -0.436 4.436 9 H 0.088 0.912 10 C 0.072 3.928 11 N -0.772 5.772 12 Si 0.912 3.088 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.266 1.266 16 C -0.169 4.169 17 Cl -0.074 7.074 18 H 0.079 0.921 19 H 0.079 0.921 20 H 0.107 0.893 21 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -7.764 -0.006 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.156 5.844 3 C -0.183 4.183 4 N -0.224 5.224 5 H 0.259 0.741 6 N -0.136 5.136 7 C 0.077 3.923 8 C -0.476 4.476 9 H 0.106 0.894 10 C -0.148 4.148 11 N -0.400 5.400 12 Si 0.737 3.263 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.191 1.191 16 C -0.217 4.217 17 Cl -0.046 7.046 18 H 0.098 0.902 19 H 0.098 0.902 20 H 0.125 0.875 21 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.990 -7.718 -0.008 8.277 hybrid contribution -0.087 0.896 -0.006 0.900 sum -3.077 -6.822 -0.014 7.484 Atomic orbital electron populations 1.23580 0.96608 1.06903 1.05339 1.85422 1.04088 1.00419 1.94450 1.22142 0.93383 0.91849 1.10927 1.46716 1.06728 1.04165 1.64819 0.74056 1.79020 1.02991 0.95221 1.36402 1.19294 0.92082 0.87844 0.93078 1.18658 0.92370 0.89183 1.47346 0.89393 1.25830 0.96340 0.99328 0.93349 1.69935 1.19184 1.15973 1.34859 0.86310 0.81427 0.78809 0.79764 1.19074 1.20619 1.19075 1.20593 0.83957 0.92300 1.24811 1.98198 1.33606 1.74953 1.97856 0.90178 0.90173 0.87452 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.89 101.05 1.00 -0.82 14 2 S -0.07 -1.25 22.52 -107.50 -2.42 -3.67 14 3 C 0.06 1.21 7.27 -16.40 -0.12 1.09 14 4 N -0.52 -11.63 7.25 31.44 0.23 -11.40 14 5 H 0.42 7.78 8.22 -182.62 -1.50 6.28 14 6 N -0.30 -8.45 10.94 32.25 0.35 -8.09 14 7 C 0.23 6.43 6.75 -84.87 -0.57 5.86 14 8 C -0.44 -12.11 9.24 -37.80 -0.35 -12.46 14 9 H 0.09 2.33 7.76 -52.49 -0.41 1.92 14 10 C 0.07 1.91 5.49 -17.35 -0.10 1.81 14 11 N -0.77 -21.46 11.93 55.54 0.66 -20.79 14 12 Si 0.91 19.68 29.56 -169.99 -5.02 14.65 14 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 14 14 H -0.28 -5.91 7.11 56.52 0.40 -5.50 14 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 14 16 C -0.17 -4.19 6.70 -39.21 -0.26 -4.45 14 17 Cl -0.07 -1.60 28.80 -51.86 -1.49 -3.10 14 18 H 0.08 0.90 8.14 -51.92 -0.42 0.48 14 19 H 0.08 0.90 8.14 -51.93 -0.42 0.48 14 20 H 0.11 0.97 8.14 -51.92 -0.42 0.55 14 21 H 0.27 6.98 8.30 -40.82 -0.34 6.64 14 LS Contribution 226.37 15.07 3.41 3.41 Total: -1.00 -30.61 226.37 -6.99 -37.60 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -2.31 Total: 0.37 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.40 Total: -8.97 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 1.24 Total: -40.29 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.42 Total: -3.67 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.49 Total: -3.10 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.61 -6.99 -37.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022757.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.633 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds