Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.40042 * 110.99759 * 2 1 4 4 C 1.39391 * 129.94950 * 319.78356 * 3 2 1 5 5 C 1.37913 * 120.19899 * 180.74582 * 4 3 2 6 6 C 1.38300 * 120.26312 * 359.97438 * 5 4 3 7 7 C 1.38312 * 119.88443 * 359.87053 * 6 5 4 8 8 C 1.37919 * 120.07800 * 0.02562 * 7 6 5 9 9 C 1.51576 * 131.56287 * 180.26152 * 8 7 6 10 10 C 1.47911 * 111.00224 * 119.97361 * 2 1 3 11 11 H 1.09000 * 110.93725 * 92.53615 * 10 2 1 12 12 C 1.52996 * 110.77882 * 329.17957 * 10 2 1 13 13 C 1.50694 * 109.47162 * 181.49986 * 12 10 2 14 14 H 1.08001 * 120.00402 * 355.09086 * 13 12 10 15 15 C 1.37879 * 120.00361 * 175.09372 * 13 12 10 16 16 N 1.31510 * 120.00560 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47004 * 270.00065 * 17 15 13 19 19 H 1.48497 * 109.47570 * 149.99997 * 17 15 13 20 20 H 1.48503 * 109.46960 * 29.99731 * 17 15 13 21 21 H 1.09007 * 109.46589 * 306.23362 * 1 2 3 22 22 H 1.09000 * 109.47617 * 66.23439 * 1 2 3 23 23 H 1.08998 * 109.47055 * 186.23809 * 1 2 3 24 24 H 1.08002 * 119.90268 * 0.72834 * 4 3 2 25 25 H 1.08004 * 119.87103 * 179.97438 * 5 4 3 26 26 H 1.08001 * 120.06115 * 179.85685 * 6 5 4 27 27 H 1.07999 * 119.96016 * 180.02562 * 7 6 5 28 28 H 1.08995 * 110.74314 * 45.69715 * 9 8 7 29 29 H 1.08995 * 110.74061 * 282.36353 * 9 8 7 30 30 H 1.08994 * 109.47746 * 61.49573 * 12 10 2 31 31 H 1.09004 * 109.47033 * 301.49783 * 12 10 2 32 32 H 0.97003 * 120.00553 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9708 1.3074 0.0000 4 6 1.5297 2.4354 -0.6900 5 6 2.1926 3.6368 -0.5510 6 6 3.2987 3.7313 0.2737 7 6 3.7406 2.6173 0.9642 8 6 3.0800 1.4141 0.8304 9 6 3.3286 0.0554 1.4548 10 6 1.9991 -0.6899 1.1962 11 1 2.1808 -1.7445 0.9891 12 6 1.0468 -0.5281 2.3826 13 6 1.6318 -1.2094 3.5928 14 1 2.5476 -1.7750 3.5042 15 6 0.9980 -1.1108 4.8133 16 7 1.5082 -1.7058 5.8693 17 14 -0.5857 -0.1320 4.9669 18 1 -0.2650 1.2794 5.2990 19 1 -1.4257 -0.7153 6.0436 20 1 -1.3252 -0.1820 3.6801 21 1 -0.3633 0.6075 0.8290 22 1 -0.3634 0.4141 -0.9405 23 1 -0.3633 -1.0216 0.1117 24 1 0.6665 2.3684 -1.3355 25 1 1.8465 4.5074 -1.0885 26 1 3.8167 4.6732 0.3783 27 1 4.6040 2.6898 1.6089 28 1 3.5160 0.1506 2.5243 29 1 4.1574 -0.4509 0.9601 30 1 0.0849 -0.9800 2.1408 31 1 0.9072 0.5320 2.5946 32 1 1.0621 -1.6367 6.7279 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261033028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = 33.334116 kcal Electronic energy + Delta-G solvation = -14514.136310 eV Core-core repulsion = 12246.403066 eV Total energy + Delta-G solvation = -2267.733244 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43177 -36.70112 -33.11889 -32.22906 -30.37150 -29.38953 -27.05132 -25.17821 -23.20439 -21.41110 -20.86130 -19.38678 -17.01498 -16.19003 -15.21997 -15.05975 -14.96138 -14.10411 -13.72207 -13.34964 -12.97764 -12.70959 -12.39629 -12.20543 -11.91568 -11.50767 -11.18662 -11.04395 -10.91049 -10.47563 -10.46626 -10.10170 -9.90440 -9.36800 -9.22347 -8.61413 -8.43687 -7.24986 -6.12330 -4.11046 1.73152 1.73496 3.25122 3.32949 3.35116 3.99188 4.37080 4.37984 5.01520 5.19388 5.25195 5.29689 5.36390 5.61235 5.69255 5.75049 5.81952 5.97247 5.99813 6.16557 6.26906 6.35213 6.47956 6.64998 6.72166 6.78409 6.87058 7.03277 7.12095 7.22913 7.37785 7.66178 7.72755 8.42985 8.91173 9.49616 11.00457 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.009417 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.508011 B = 2972.765718 C = 3061.935460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.484 5.484 3 C 0.102 3.898 4 C -0.147 4.147 5 C -0.104 4.104 6 C -0.154 4.154 7 C -0.085 4.085 8 C -0.126 4.126 9 C -0.079 4.079 10 C 0.088 3.912 11 H 0.096 0.904 12 C -0.027 4.027 13 C -0.518 4.518 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.014 0.986 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 8.008 -11.098 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.197 5.197 3 C 0.003 3.997 4 C -0.168 4.168 5 C -0.123 4.123 6 C -0.173 4.173 7 C -0.104 4.104 8 C -0.129 4.129 9 C -0.116 4.116 10 C -0.017 4.017 11 H 0.114 0.886 12 C -0.065 4.065 13 C -0.556 4.556 14 H 0.095 0.905 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.033 0.967 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.403 7.592 -11.364 13.673 hybrid contribution -1.127 0.851 0.817 1.631 sum -0.723 8.443 -10.546 13.529 Atomic orbital electron populations 1.22459 0.86588 1.02742 1.00821 1.60808 1.08877 1.10563 1.39441 1.19805 0.95853 0.89051 0.94982 1.20376 1.01910 0.91410 1.03097 1.20742 0.95916 0.96671 0.98962 1.20879 0.98478 0.98151 0.99793 1.20400 0.99419 0.91476 0.99090 1.20755 0.97596 0.95897 0.98651 1.21411 0.97349 0.90413 1.02472 1.22849 0.94036 0.97991 0.86806 0.88605 1.20067 0.95411 0.96927 0.94140 1.20927 1.10920 1.32443 0.91299 0.90521 1.24971 0.97195 0.95138 0.95770 1.69894 1.39872 1.43799 1.00131 0.86836 0.84172 0.80631 0.78012 1.20254 1.21230 1.19239 0.93860 0.91976 0.90625 0.86750 0.86418 0.86444 0.86359 0.88160 0.90762 0.95907 0.96742 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 7.92 60.06 0.48 0.82 16 2 N -0.48 -8.96 5.30 -169.35 -0.90 -9.86 16 3 C 0.10 1.86 5.88 -83.41 -0.49 1.37 16 4 C -0.15 -2.31 9.55 -39.27 -0.37 -2.68 16 5 C -0.10 -1.46 10.02 -39.68 -0.40 -1.86 16 6 C -0.15 -2.19 10.06 -39.53 -0.40 -2.58 16 7 C -0.09 -1.37 10.03 -39.67 -0.40 -1.77 16 8 C -0.13 -2.32 6.23 -104.04 -0.65 -2.97 16 9 C -0.08 -1.52 6.41 -26.61 -0.17 -1.69 16 10 C 0.09 1.79 3.28 -66.32 -0.22 1.58 16 11 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 12 C -0.03 -0.64 2.34 -27.89 -0.07 -0.70 16 13 C -0.52 -14.20 8.61 -34.44 -0.30 -14.50 16 14 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 17 Si 0.88 21.62 27.37 -169.99 -4.65 16.96 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.35 6.69 56.52 0.38 -5.98 16 21 H 0.04 0.78 6.85 -51.93 -0.36 0.42 16 22 H 0.06 0.87 7.61 -51.93 -0.40 0.48 16 23 H 0.07 1.21 7.65 -51.93 -0.40 0.81 16 24 H 0.11 1.57 7.56 -52.49 -0.40 1.17 16 25 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 26 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.10 2.11 7.12 -51.93 -0.37 1.74 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.53 6.04 -51.93 -0.31 0.22 16 31 H 0.01 0.35 7.06 -51.93 -0.37 -0.01 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -29.94 259.97 -8.22 -38.16 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.29 Total: 0.23 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.08 Total: -23.06 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.12 Total: -36.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.65 Total: 16.96 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.94 -8.22 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.493 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds