Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39669 * 120.00286 * 2 1 4 4 C 1.38934 * 120.11282 * 359.97438 * 3 2 1 5 5 C 1.37954 * 119.86086 * 179.97438 * 4 3 2 6 6 C 1.38581 * 120.31613 * 0.02562 * 5 4 3 7 7 C 1.38290 * 119.96446 * 359.97438 * 6 5 4 8 8 C 1.38372 * 119.92684 * 359.96923 * 7 6 5 9 9 C 1.51387 * 109.74799 * 179.97438 * 7 6 5 10 10 C 1.54339 * 105.17207 * 342.81095 * 9 7 6 11 11 C 1.51698 * 130.21724 * 179.79077 * 6 5 4 12 12 H 1.08994 * 110.25542 * 78.31243 * 11 6 5 13 13 C 1.50699 * 110.49285 * 316.06284 * 11 6 5 14 14 H 1.08002 * 120.00344 * 329.19248 * 13 11 6 15 15 C 1.37878 * 119.99664 * 149.19215 * 13 11 6 16 16 N 1.31509 * 120.00388 * 5.19060 * 15 13 11 17 17 Si 1.86805 * 119.99638 * 185.19025 * 15 13 11 18 18 H 1.48499 * 109.47492 * 59.99962 * 17 15 13 19 19 H 1.48502 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47183 * 299.99893 * 17 15 13 21 21 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47141 * 300.00638 * 1 2 3 23 23 H 1.09000 * 109.47259 * 60.00070 * 1 2 3 24 24 H 0.97008 * 119.99529 * 179.97438 * 2 1 3 25 25 H 1.08003 * 120.06828 * 359.94872 * 4 3 2 26 26 H 1.08001 * 119.84689 * 179.97438 * 5 4 3 27 27 H 1.07998 * 119.92034 * 179.97438 * 8 7 6 28 28 H 1.09000 * 110.30703 * 223.88562 * 9 7 6 29 29 H 1.08999 * 110.30044 * 101.72900 * 9 7 6 30 30 H 1.09001 * 110.82047 * 144.59928 * 10 9 7 31 31 H 1.09006 * 110.82373 * 267.94666 * 10 9 7 32 32 H 0.96999 * 120.00189 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4711 2.4141 -0.0005 5 6 2.1662 3.6058 0.0000 6 6 3.5520 3.6073 0.0005 7 6 4.2440 2.4099 0.0011 8 6 3.5512 1.2122 0.0017 9 6 5.7336 2.6800 0.0010 10 6 5.8771 4.1521 -0.4399 11 6 4.5303 4.7667 -0.0031 12 1 4.6149 5.1921 0.9969 13 6 4.0940 5.8221 -0.9863 14 1 3.5518 5.5396 -1.8767 15 6 4.3869 7.1483 -0.7493 16 7 5.1339 7.4830 0.2800 17 14 3.7227 8.4699 -1.8903 18 1 2.2384 8.4246 -1.8892 19 1 4.1781 9.8033 -1.4213 20 1 4.2242 8.2324 -3.2677 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.9499 -0.8402 0.0004 25 1 0.3911 2.4176 -0.0018 26 1 1.6279 4.5421 -0.0008 27 1 4.0917 0.2772 0.0017 28 1 6.2373 2.0223 -0.7074 29 1 6.1428 2.5435 1.0020 30 1 6.7078 4.6323 0.0774 31 1 6.0032 4.2226 -1.5204 32 1 5.3397 8.4161 0.4470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = 16.857636 kcal Electronic energy + Delta-G solvation = -14102.706356 eV Core-core repulsion = 11834.258638 eV Total energy + Delta-G solvation = -2268.447718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25969 -36.45969 -33.43810 -32.29053 -30.36217 -27.61283 -27.29760 -25.08358 -23.35656 -21.84788 -19.47613 -19.40896 -16.61649 -16.36468 -15.59252 -14.66568 -14.17044 -14.02519 -13.78333 -13.57293 -12.76787 -12.51410 -12.01828 -11.89814 -11.78991 -11.47979 -10.93820 -10.75535 -10.49483 -10.39995 -10.11922 -9.96253 -9.46173 -9.09150 -8.77644 -8.36867 -7.94887 -6.66367 -5.96529 -3.99724 2.18604 2.44971 3.35065 3.39540 3.42872 3.80240 4.46569 4.68648 5.19339 5.29877 5.45483 5.55961 5.65249 5.76644 5.86484 6.02540 6.17155 6.19734 6.32564 6.45978 6.70831 6.81286 6.92298 7.06751 7.21874 7.29721 7.49706 7.60205 7.77135 7.87194 7.94195 7.99501 8.13247 8.50271 9.07114 9.63220 11.11253 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.008067 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.325149 B = 3470.087983 C = 4040.596521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.764 5.764 3 C 0.183 3.817 4 C -0.199 4.199 5 C -0.063 4.063 6 C -0.096 4.096 7 C -0.072 4.072 8 C -0.186 4.186 9 C -0.082 4.082 10 C -0.106 4.106 11 C 0.074 3.926 12 H 0.066 0.934 13 C -0.504 4.504 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.393 0.607 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -11.860 0.200 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.396 5.396 3 C 0.083 3.917 4 C -0.222 4.222 5 C -0.081 4.081 6 C -0.098 4.098 7 C -0.073 4.073 8 C -0.208 4.208 9 C -0.119 4.119 10 C -0.144 4.144 11 C 0.055 3.945 12 H 0.084 0.916 13 C -0.542 4.542 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.226 0.774 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.230 -11.629 0.293 12.754 hybrid contribution -0.275 0.381 -0.625 0.783 sum -5.505 -11.248 -0.333 12.527 Atomic orbital electron populations 1.21371 0.81106 1.01237 1.00732 1.44191 1.04929 1.05186 1.85341 1.17475 0.90767 0.85849 0.97588 1.20444 0.98565 0.91283 1.11864 1.20469 0.93741 0.96711 0.97217 1.21318 0.93754 0.96529 0.98222 1.20491 0.96203 0.92740 0.97854 1.19835 0.91530 0.97052 1.12414 1.21132 0.91358 0.99131 1.00327 1.22440 1.00383 0.91349 1.00278 1.18473 0.87574 0.89685 0.98726 0.91626 1.21016 1.35737 0.90803 1.06623 0.92687 1.24995 0.94842 0.98663 0.95313 1.69929 1.36930 1.17659 1.28700 0.86704 0.79497 0.80910 0.81171 1.20247 1.21359 1.20275 0.91736 0.93546 0.93530 0.77401 0.87219 0.86424 0.87774 0.92604 0.91603 0.92323 0.92390 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 9.94 59.85 0.60 1.67 16 2 N -0.76 -10.19 5.89 -65.43 -0.39 -10.58 16 3 C 0.18 3.16 6.65 -83.83 -0.56 2.60 16 4 C -0.20 -3.67 9.31 -39.43 -0.37 -4.04 16 5 C -0.06 -1.34 9.77 -39.56 -0.39 -1.72 16 6 C -0.10 -2.22 5.61 -103.98 -0.58 -2.80 16 7 C -0.07 -1.49 6.13 -104.22 -0.64 -2.13 16 8 C -0.19 -3.38 9.89 -39.33 -0.39 -3.76 16 9 C -0.08 -1.60 6.77 -26.84 -0.18 -1.78 16 10 C -0.11 -2.43 6.56 -25.32 -0.17 -2.59 16 11 C 0.07 1.88 2.88 -91.72 -0.26 1.62 16 12 H 0.07 1.85 7.50 -51.93 -0.39 1.46 16 13 C -0.50 -13.95 8.09 -34.44 -0.28 -14.23 16 14 H 0.05 1.53 7.82 -52.49 -0.41 1.12 16 15 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 16 N -0.89 -25.94 12.90 55.43 0.72 -25.23 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.50 7.95 -51.92 -0.41 0.09 16 23 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16 24 H 0.39 4.41 8.84 -40.82 -0.36 4.05 16 25 H 0.11 1.76 6.74 -52.48 -0.35 1.40 16 26 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 27 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 1.34 7.91 -51.93 -0.41 0.93 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -29.72 268.43 -8.38 -38.10 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.42 Total: 2.73 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -3.32 Total: -25.49 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.33 Total: -35.81 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.72 -8.38 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.958 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds