Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46841 * 299.99849 * 3 2 1 6 6 H 1.48495 * 109.47049 * 59.99784 * 3 2 1 7 7 C 1.37879 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99720 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47112 * 299.99658 * 9 7 2 11 11 N 1.46899 * 109.47541 * 59.99682 * 9 7 2 12 12 C 1.50704 * 109.47096 * 179.97438 * 9 7 2 13 13 C 1.36651 * 120.10362 * 264.97980 * 12 9 7 14 14 C 1.38742 * 120.51576 * 180.02562 * 13 12 9 15 15 C 1.37842 * 120.59809 * 359.97438 * 14 13 12 16 16 C 1.38942 * 119.79767 * 0.02562 * 15 14 13 17 17 O 1.34825 * 133.46452 * 180.02562 * 16 15 14 18 18 N 1.41354 * 109.33484 * 179.97438 * 17 16 15 19 19 C 1.29743 * 109.74654 * 359.97438 * 18 17 16 20 20 C 1.39645 * 120.10435 * 84.99396 * 12 9 7 21 21 H 0.97001 * 119.99935 * 0.02562 * 1 2 3 22 22 H 1.00899 * 110.99794 * 296.04621 * 11 9 7 23 23 H 1.00899 * 110.99485 * 60.00001 * 11 9 7 24 24 H 1.08002 * 119.74449 * 359.97438 * 13 12 9 25 25 H 1.08002 * 119.70589 * 179.97438 * 14 13 12 26 26 H 1.07998 * 120.10401 * 179.97438 * 15 14 13 27 27 H 1.08005 * 126.28775 * 180.26161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5773 -1.1991 12 6 2.2305 -3.6446 0.0005 13 6 2.5972 -4.2327 -1.1771 14 6 3.4977 -5.2882 -1.1870 15 6 4.0378 -5.7608 -0.0101 16 6 3.6781 -5.1767 1.1981 17 8 4.0252 -5.4087 2.4801 18 7 3.3449 -4.4988 3.3212 19 6 2.5950 -3.7178 2.6064 20 6 2.7657 -4.1084 1.2040 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3004 -1.8578 -1.1910 23 1 0.9653 -2.5260 -2.0380 24 1 2.1823 -3.8738 -2.1074 25 1 3.7782 -5.7437 -2.1253 26 1 4.7377 -6.5830 -0.0271 27 1 1.9640 -2.9232 2.9764 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085928.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = 58.650065 kcal Electronic energy + Delta-G solvation = -14173.071038 eV Core-core repulsion = 11705.176571 eV Total energy + Delta-G solvation = -2467.894467 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.19511 -37.63552 -34.77878 -33.11784 -31.61889 -29.66768 -28.97970 -26.13852 -23.39366 -22.45370 -21.85067 -19.89460 -16.92808 -16.79074 -16.56934 -15.38589 -15.05141 -14.84293 -14.23376 -13.39783 -13.20232 -12.98765 -12.27133 -12.15625 -11.74206 -11.34534 -11.19123 -11.08437 -10.81715 -10.74648 -10.66416 -10.09272 -9.76684 -8.82677 -8.37800 -7.90507 -7.37279 -6.24755 -4.42506 1.15874 1.87821 2.59021 3.04525 3.12855 3.22726 3.27448 4.12835 4.28731 4.72118 4.95218 4.99469 5.14230 5.41052 5.67003 5.80643 5.97617 6.20786 6.40684 6.42979 6.61387 6.79041 6.92757 7.21570 7.49007 7.60081 7.70854 7.88731 8.49211 8.75640 8.94338 9.30474 10.73040 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.009876 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.007532 B = 2834.426173 C = 3216.024442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.235 3.765 10 H 0.054 0.946 11 N -0.850 5.850 12 C 0.057 3.943 13 C -0.154 4.154 14 C -0.058 4.058 15 C -0.161 4.161 16 C 0.079 3.921 17 O -0.112 6.112 18 N -0.314 5.314 19 C 0.133 3.867 20 C -0.201 4.201 21 H 0.267 0.733 22 H 0.358 0.642 23 H 0.314 0.686 24 H 0.133 0.867 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -5.941 -1.711 7.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.125 3.875 10 H 0.071 0.929 11 N -0.380 5.380 12 C 0.054 3.946 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.180 4.180 16 C 0.025 3.975 17 O -0.120 6.120 18 N -0.058 5.058 19 C -0.067 4.067 20 C -0.205 4.205 21 H 0.077 0.923 22 H 0.175 0.825 23 H 0.124 0.876 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.856 -6.961 -0.207 7.961 hybrid contribution 0.555 2.275 -0.862 2.495 sum 4.411 -4.687 -1.069 6.525 Atomic orbital electron populations 1.69739 1.05858 1.27437 1.49866 1.25002 0.94949 0.99382 0.94048 0.86437 0.80185 0.83009 0.77857 1.19668 1.20779 1.20693 1.21741 0.93714 0.90493 1.52661 0.92390 1.18069 0.89092 0.88036 0.92325 0.92857 1.59555 1.18375 1.56249 1.03869 1.19932 0.92256 0.92695 0.89717 1.20635 1.00019 0.97835 0.98750 1.21074 0.94596 0.95304 0.96736 1.19751 1.06177 1.04036 0.88080 1.20265 0.95128 0.95383 0.86742 1.89037 1.59473 1.50360 1.13124 1.79763 1.10418 1.03466 1.12180 1.26121 0.93790 0.95663 0.91103 1.20652 1.05117 1.00766 0.93983 0.92263 0.82491 0.87633 0.84915 0.85249 0.85553 0.77431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.00 11.54 55.43 0.64 -22.36 15 2 C 0.07 1.75 5.38 -17.82 -0.10 1.66 15 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.55 -13.70 8.71 -34.44 -0.30 -14.00 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.23 5.41 2.86 -70.02 -0.20 5.21 15 10 H 0.05 1.33 8.03 -51.93 -0.42 0.91 15 11 N -0.85 -18.66 8.78 -6.65 -0.06 -18.72 15 12 C 0.06 1.17 4.99 -104.67 -0.52 0.65 15 13 C -0.15 -2.76 9.21 -39.97 -0.37 -3.13 15 14 C -0.06 -0.87 10.02 -39.54 -0.40 -1.27 15 15 C -0.16 -2.57 10.07 -39.47 -0.40 -2.96 15 16 C 0.08 1.49 7.48 -38.47 -0.29 1.20 15 17 O -0.11 -2.20 12.06 7.67 0.09 -2.11 15 18 N -0.31 -6.07 12.81 31.94 0.41 -5.66 15 19 C 0.13 2.50 12.09 -15.07 -0.18 2.32 15 20 C -0.20 -4.04 6.13 -105.16 -0.64 -4.68 15 21 H 0.27 6.62 8.31 -40.82 -0.34 6.28 15 22 H 0.36 8.49 7.08 -39.29 -0.28 8.21 15 23 H 0.31 6.45 7.20 -39.29 -0.28 6.16 15 24 H 0.13 2.25 6.24 -52.49 -0.33 1.92 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 26 H 0.13 1.65 8.06 -52.49 -0.42 1.22 15 27 H 0.21 3.41 8.06 -52.48 -0.42 2.99 15 LS Contribution 241.77 15.07 3.64 3.64 Total: -1.00 -27.03 241.77 -5.80 -32.84 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -2.11 Total: 12.42 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -3.40 Total: -15.01 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.99 Total: -46.74 kcal Atomic # 8 Polarization: -2.20 SS G_CDS: 0.09 Total: -2.11 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.03 -5.80 -32.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085928.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.488 kcal (2) G-P(sol) polarization free energy of solvation -27.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds