Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47127 * 300.00235 * 3 2 1 6 6 H 1.48507 * 109.47198 * 60.00177 * 3 2 1 7 7 C 1.37882 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99927 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.34101 * 125.03679 * 124.97514 * 10 9 7 12 12 C 1.38211 * 107.90233 * 180.02562 * 11 10 9 13 13 C 1.41191 * 134.74783 * 180.02562 * 12 11 10 14 14 C 1.36068 * 119.49477 * 179.73957 * 13 12 11 15 15 O 1.35977 * 119.19818 * 180.26217 * 14 13 12 16 16 C 1.40084 * 121.60379 * 0.52098 * 14 13 12 17 17 C 1.35575 * 121.77929 * 359.46417 * 16 14 13 18 18 C 1.41173 * 119.67167 * 0.25654 * 17 16 14 19 19 N 1.32117 * 134.58643 * 179.97438 * 18 17 16 20 20 H 0.97006 * 120.00471 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46775 * 60.00157 * 9 7 2 22 22 H 1.08998 * 109.46850 * 300.00052 * 9 7 2 23 23 H 1.07998 * 126.04212 * 359.97438 * 11 10 9 24 24 H 1.07998 * 120.25400 * 359.97438 * 13 12 11 25 25 H 0.96694 * 113.99743 * 270.24947 * 15 14 13 26 26 H 1.08002 * 119.11346 * 179.74923 * 16 14 13 27 27 H 1.07996 * 120.16376 * 180.28546 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2249 -4.6068 0.9002 12 6 3.2610 -5.4587 0.5669 13 6 3.7802 -6.6532 1.1121 14 6 4.8415 -7.2575 0.5122 15 8 5.3333 -8.4105 1.0392 16 6 5.4433 -6.7179 -0.6319 17 6 4.9923 -5.5744 -1.2040 18 6 3.8908 -4.8970 -0.6378 19 7 3.2255 -3.7956 -0.9375 20 1 -0.4851 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 1.5525 -4.7210 1.7376 24 1 3.3360 -7.0860 1.9962 25 1 6.0253 -8.2765 1.7011 26 1 6.2863 -7.2289 -1.0730 27 1 5.4732 -5.1840 -2.0887 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105564.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = 44.887456 kcal Electronic energy + Delta-G solvation = -13599.549923 eV Core-core repulsion = 11131.058664 eV Total energy + Delta-G solvation = -2468.491259 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.65553 -38.32109 -35.37762 -33.37538 -31.44646 -30.98063 -28.02522 -27.03128 -24.16526 -21.78539 -21.44913 -20.06562 -18.11471 -16.82857 -16.32615 -16.05285 -15.11887 -14.71631 -14.38988 -13.87434 -13.61378 -12.90125 -12.64432 -12.41123 -12.01035 -11.68177 -11.20499 -10.97460 -10.69297 -10.46485 -10.33188 -9.85904 -9.70234 -9.52995 -8.75922 -8.01622 -7.06570 -6.37345 -4.43449 1.10171 2.12176 2.99060 3.16225 3.24057 3.25451 3.34566 4.10344 4.21952 4.51445 4.84080 4.99533 5.11510 5.39697 5.71993 5.79124 5.86533 5.91599 6.41537 6.53831 6.75692 6.81112 6.83974 6.88819 7.21528 7.51666 7.68990 7.70756 7.94646 8.37149 8.64665 9.23208 10.71772 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059235 B = 0.006248 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.578475 B = 4480.630967 C = 4697.594842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.243 3.757 10 N -0.266 5.266 11 C 0.064 3.936 12 C -0.214 4.214 13 C -0.060 4.060 14 C 0.042 3.958 15 O -0.503 6.503 16 C -0.114 4.114 17 C -0.080 4.080 18 C 0.071 3.929 19 N -0.287 5.287 20 H 0.269 0.731 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.179 0.821 24 H 0.121 0.879 25 H 0.376 0.624 26 H 0.123 0.877 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -10.158 2.996 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.126 3.874 10 N -0.038 5.038 11 C -0.095 4.095 12 C -0.225 4.225 13 C -0.081 4.081 14 C -0.004 4.004 15 O -0.311 6.311 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.081 4.081 19 N -0.116 5.116 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.196 0.804 24 H 0.139 0.861 25 H 0.230 0.770 26 H 0.141 0.859 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.784 -9.104 1.742 10.925 hybrid contribution 0.638 0.496 0.954 1.250 sum 6.421 -8.607 2.697 11.072 Atomic orbital electron populations 1.69915 1.06091 1.27845 1.49198 1.24946 0.95030 0.99702 0.94245 0.86215 0.80085 0.82074 0.77846 1.19422 1.20523 1.20639 1.21218 0.94108 0.88902 1.52893 0.90963 1.20071 0.85872 0.81395 1.00099 1.49649 1.21090 1.17407 1.15675 1.22660 0.99617 0.90391 0.96842 1.19330 1.01677 1.00006 1.01448 1.20347 0.96360 0.92569 0.98779 1.17598 0.97624 0.89001 0.96170 1.84894 1.58068 1.28210 1.59947 1.20688 1.00459 0.95788 0.96736 1.19701 0.95138 0.94907 1.00344 1.21040 0.97374 0.94020 0.95705 1.77850 1.02507 1.17479 1.13748 0.92153 0.92628 0.92033 0.80419 0.86065 0.77020 0.85904 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.29 55.43 0.74 -23.80 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.53 -14.41 9.20 -34.44 -0.32 -14.73 15 8 H 0.07 2.04 7.81 -52.48 -0.41 1.63 15 9 C 0.24 5.90 6.20 -5.19 -0.03 5.87 15 10 N -0.27 -5.96 3.62 -61.98 -0.22 -6.18 15 11 C 0.06 1.20 11.45 -16.57 -0.19 1.01 15 12 C -0.21 -3.96 6.33 -105.20 -0.67 -4.63 15 13 C -0.06 -0.93 9.99 -39.24 -0.39 -1.32 15 14 C 0.04 0.62 6.63 -39.67 -0.26 0.36 15 15 O -0.50 -6.35 13.45 -19.67 -0.26 -6.62 15 16 C -0.11 -1.67 9.81 -39.84 -0.39 -2.06 15 17 C -0.08 -1.34 10.08 -39.42 -0.40 -1.73 15 18 C 0.07 1.44 7.49 -83.04 -0.62 0.82 15 19 N -0.29 -6.70 12.34 33.26 0.41 -6.29 15 20 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 21 H 0.06 1.43 8.14 -51.93 -0.42 1.00 15 22 H 0.06 1.44 8.04 -51.93 -0.42 1.02 15 23 H 0.18 2.57 8.06 -52.49 -0.42 2.14 15 24 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.38 2.91 9.06 45.56 0.41 3.32 15 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 249.80 15.07 3.76 3.76 Total: -1.00 -30.69 249.80 -5.63 -36.32 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -1.66 Total: 1.72 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -3.37 Total: -14.79 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.92 Total: -36.27 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.26 Total: -6.62 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.69 -5.63 -36.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105564.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.211 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds