Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47127 * 300.00235 * 3 2 1 6 6 H 1.48507 * 109.47198 * 60.00177 * 3 2 1 7 7 C 1.37882 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99927 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.34101 * 125.03679 * 124.97514 * 10 9 7 12 12 C 1.38211 * 107.90233 * 180.02562 * 11 10 9 13 13 C 1.41191 * 134.74783 * 180.02562 * 12 11 10 14 14 C 1.36068 * 119.49477 * 179.73957 * 13 12 11 15 15 O 1.35977 * 119.19818 * 180.26217 * 14 13 12 16 16 C 1.40084 * 121.60379 * 0.52098 * 14 13 12 17 17 C 1.35575 * 121.77929 * 359.46417 * 16 14 13 18 18 C 1.41173 * 119.67167 * 0.25654 * 17 16 14 19 19 N 1.32117 * 134.58643 * 179.97438 * 18 17 16 20 20 H 0.97006 * 120.00471 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46775 * 60.00157 * 9 7 2 22 22 H 1.08998 * 109.46850 * 300.00052 * 9 7 2 23 23 H 1.07998 * 126.04212 * 359.97438 * 11 10 9 24 24 H 1.07998 * 120.25400 * 359.97438 * 13 12 11 25 25 H 0.96694 * 113.99743 * 270.24947 * 15 14 13 26 26 H 1.08002 * 119.11346 * 179.74923 * 16 14 13 27 27 H 1.07996 * 120.16376 * 180.28546 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2249 -4.6068 0.9002 12 6 3.2610 -5.4587 0.5669 13 6 3.7802 -6.6532 1.1121 14 6 4.8415 -7.2575 0.5122 15 8 5.3333 -8.4105 1.0392 16 6 5.4433 -6.7179 -0.6319 17 6 4.9923 -5.5744 -1.2040 18 6 3.8908 -4.8970 -0.6378 19 7 3.2255 -3.7956 -0.9375 20 1 -0.4851 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 1.5525 -4.7210 1.7376 24 1 3.3360 -7.0860 1.9962 25 1 6.0253 -8.2765 1.7011 26 1 6.2863 -7.2289 -1.0730 27 1 5.4732 -5.1840 -2.0887 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105564.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = 23.401855 kcal Electronic energy + Delta-G solvation = -13600.481609 eV Core-core repulsion = 11131.058664 eV Total energy + Delta-G solvation = -2469.422944 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.10779 -39.50441 -36.70431 -35.26082 -32.91044 -32.53767 -29.56925 -28.58497 -25.88763 -23.34096 -22.78460 -21.49742 -19.34755 -18.72700 -17.88158 -17.42976 -16.51272 -16.28119 -15.92942 -15.33647 -14.92425 -14.43877 -14.17382 -13.93701 -13.68033 -13.05280 -12.88539 -12.77740 -12.38502 -12.20969 -11.66819 -11.55589 -11.12946 -11.02186 -10.77013 -9.50057 -8.46855 -8.37599 -6.54499 -0.21609 0.84464 1.34759 1.36389 1.47841 1.57315 1.71910 2.31214 2.82779 2.92526 3.27243 3.60388 3.83431 4.20378 4.36854 4.46985 4.54863 4.67547 4.81574 4.92845 5.18454 5.41642 5.51050 5.58145 5.63164 5.71344 5.90314 6.08486 6.54615 6.86184 7.06275 7.15834 8.68125 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059235 B = 0.006248 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.578475 B = 4480.630967 C = 4697.594842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.052 0.948 9 C 0.257 3.743 10 N -0.295 5.295 11 C 0.070 3.930 12 C -0.224 4.224 13 C -0.065 4.065 14 C 0.052 3.948 15 O -0.504 6.504 16 C -0.092 4.092 17 C -0.106 4.106 18 C 0.055 3.945 19 N -0.348 5.348 20 H 0.275 0.725 21 H 0.030 0.970 22 H 0.069 0.931 23 H 0.216 0.784 24 H 0.150 0.850 25 H 0.403 0.597 26 H 0.158 0.842 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -11.587 4.089 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.139 3.861 10 N -0.068 5.068 11 C -0.088 4.088 12 C -0.234 4.234 13 C -0.086 4.086 14 C 0.006 3.994 15 O -0.316 6.316 16 C -0.115 4.115 17 C -0.127 4.127 18 C -0.097 4.097 19 N -0.176 5.176 20 H 0.084 0.916 21 H 0.048 0.952 22 H 0.087 0.913 23 H 0.233 0.767 24 H 0.167 0.833 25 H 0.261 0.739 26 H 0.175 0.825 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.094 -10.557 2.855 13.036 hybrid contribution 0.364 0.692 0.659 1.023 sum 7.459 -9.864 3.514 12.856 Atomic orbital electron populations 1.69979 1.07140 1.28939 1.49502 1.25714 0.95870 1.02699 0.93630 0.85281 0.78328 0.78254 0.78460 1.20058 1.19836 1.19162 1.21348 0.93351 0.90744 1.53494 0.93012 1.19629 0.85912 0.81531 0.99031 1.49341 1.21760 1.18302 1.17349 1.23356 0.99847 0.88947 0.96617 1.19644 1.01612 1.01072 1.01098 1.20607 0.96664 0.91582 0.99746 1.17695 0.97005 0.88854 0.95801 1.84835 1.59095 1.26813 1.60810 1.21084 1.00271 0.94337 0.95803 1.19963 0.95087 0.96051 1.01578 1.21621 0.97952 0.93515 0.96628 1.77716 1.04258 1.19947 1.15709 0.91632 0.95220 0.91347 0.76717 0.83270 0.73933 0.82474 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.02 13.29 21.45 0.28 -50.74 15 2 C 0.02 1.19 5.46 84.66 0.46 1.65 15 3 Si 0.97 43.23 29.54 68.60 2.03 45.26 15 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 7 C -0.55 -30.84 9.20 25.60 0.24 -30.61 15 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 15 9 C 0.26 13.04 6.20 85.63 0.53 13.57 15 10 N -0.30 -13.66 3.62 -350.01 -1.27 -14.93 15 11 C 0.07 2.60 11.45 84.34 0.97 3.57 15 12 C -0.22 -8.05 6.33 -20.24 -0.13 -8.18 15 13 C -0.07 -1.85 9.99 22.49 0.22 -1.62 15 14 C 0.05 1.36 6.63 22.21 0.15 1.50 15 15 O -0.50 -10.32 13.45 -93.29 -1.25 -11.57 15 16 C -0.09 -2.41 9.81 22.10 0.22 -2.19 15 17 C -0.11 -3.43 10.08 22.37 0.23 -3.21 15 18 C 0.06 2.26 7.49 42.15 0.32 2.58 15 19 N -0.35 -16.88 12.34 -48.69 -0.60 -17.48 15 20 H 0.27 14.22 8.31 -92.70 -0.77 13.45 15 21 H 0.03 1.62 8.14 -2.39 -0.02 1.60 15 22 H 0.07 3.29 8.04 -2.39 -0.02 3.28 15 23 H 0.22 5.86 8.06 -2.91 -0.02 5.83 15 24 H 0.15 3.32 8.06 -2.91 -0.02 3.30 15 25 H 0.40 4.17 9.06 -74.06 -0.67 3.49 15 26 H 0.16 3.00 8.06 -2.91 -0.02 2.98 15 27 H 0.14 3.98 8.06 -2.91 -0.02 3.96 15 Total: -1.00 -67.66 249.80 2.91 -64.75 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.52 Total: 7.65 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.20 Total: -22.94 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.58 Total: -83.15 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.25 Total: -11.57 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.66 2.91 -64.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105564.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.151 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds