Wall clock time and date at job start Mon Mar 30 2020 02:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30578 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48504 * 109.46974 * 274.97818 * 3 2 1 5 5 H 1.48497 * 109.47380 * 34.98018 * 3 2 1 6 6 H 1.48497 * 109.46730 * 154.98523 * 3 2 1 7 7 C 1.40353 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99892 * 186.33058 * 7 2 1 9 9 C 1.40798 * 120.00239 * 6.32817 * 7 2 1 10 10 N 1.33376 * 119.92320 * 353.97115 * 9 7 2 11 11 C 1.32876 * 119.47182 * 180.27091 * 10 9 7 12 12 C 1.41135 * 122.08107 * 179.69760 * 11 10 9 13 13 N 1.31782 * 118.18422 * 180.02562 * 12 11 10 14 14 C 1.32256 * 122.24090 * 0.02562 * 13 12 11 15 15 N 1.31310 * 123.58211 * 359.97438 * 14 13 12 16 16 C 1.33700 * 120.23144 * 0.02562 * 15 14 13 17 17 N 1.33701 * 121.94736 * 179.97438 * 16 15 14 18 18 C 1.31725 * 119.77835 * 180.02562 * 17 16 15 19 19 O 1.35211 * 119.80751 * 179.97438 * 18 17 16 20 20 H 0.97007 * 119.99922 * 0.02562 * 1 2 3 21 21 H 1.07994 * 120.90722 * 0.02562 * 12 11 10 22 22 H 1.07998 * 118.20784 * 179.97438 * 14 13 12 23 23 H 0.96701 * 114.00252 * 90.00494 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.3820 2.1072 -1.3948 5 1 1.4938 2.6201 0.8026 6 1 3.5860 1.4121 0.5920 7 6 2.0075 -1.2155 0.0005 8 1 3.0826 -1.2183 0.1037 9 6 1.3100 -2.4312 -0.1333 10 7 -0.0238 -2.4358 -0.1395 11 6 -0.6730 -3.5888 -0.2609 12 6 -2.0826 -3.6582 -0.2677 13 7 -2.6469 -4.8427 -0.3920 14 6 -1.9380 -5.9532 -0.5083 15 7 -0.6252 -5.9799 -0.5115 16 6 0.0715 -4.8450 -0.3925 17 7 1.4084 -4.8324 -0.3910 18 6 2.0518 -3.6893 -0.2706 19 8 3.4038 -3.6759 -0.2686 20 1 -0.4850 0.8401 -0.0004 21 1 -2.6825 -2.7651 -0.1738 22 1 -2.4679 -6.8891 -0.6061 23 1 3.7976 -3.5797 -1.1465 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261117142.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:55 Heat of formation + Delta-G solvation = 17.755067 kcal Electronic energy + Delta-G solvation = -13867.951287 eV Core-core repulsion = 11294.743136 eV Total energy + Delta-G solvation = -2573.208151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.054 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.83996 -39.85910 -37.66439 -36.29932 -35.06879 -33.13512 -31.69553 -28.76599 -25.84615 -24.96227 -23.59682 -21.29438 -19.84485 -18.90767 -18.54335 -17.96242 -16.71083 -16.45459 -16.13917 -15.52399 -14.95343 -14.35564 -13.73656 -13.60352 -13.23149 -13.05804 -12.70820 -12.64509 -12.27072 -12.11190 -11.81552 -11.34176 -10.63151 -10.50677 -9.83266 -9.32431 -8.58749 -6.88912 -0.64985 -0.17592 1.28669 1.43613 1.46385 1.62262 2.04933 2.13225 2.45949 2.84933 3.16388 3.45494 3.47935 3.56772 3.89804 4.21506 4.53678 4.73684 4.93688 5.04165 5.51931 5.77872 5.98873 6.04651 6.30845 6.70595 6.82347 7.37326 7.57456 8.02754 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.038651 B = 0.010429 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.266134 B = 2684.272761 C = 3393.870735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.007 3.993 3 Si 1.006 2.994 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.244 1.244 7 C -0.340 4.340 8 H 0.130 0.870 9 C 0.143 3.857 10 N -0.486 5.486 11 C 0.037 3.963 12 C 0.147 3.853 13 N -0.503 5.503 14 C 0.207 3.793 15 N -0.487 5.487 16 C 0.146 3.854 17 N -0.485 5.485 18 C 0.299 3.701 19 O -0.470 6.470 20 H 0.299 0.701 21 H 0.184 0.816 22 H 0.220 0.780 23 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 4.426 -1.584 5.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.221 4.221 3 Si 0.824 3.176 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.166 1.166 7 C -0.372 4.372 8 H 0.148 0.852 9 C 0.011 3.989 10 N -0.209 5.209 11 C -0.105 4.105 12 C -0.035 4.035 13 N -0.217 5.217 14 C -0.082 4.082 15 N -0.203 5.203 16 C -0.102 4.102 17 N -0.209 5.209 18 C 0.084 3.916 19 O -0.278 6.278 20 H 0.111 0.889 21 H 0.201 0.799 22 H 0.236 0.764 23 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.657 3.352 -1.110 3.900 hybrid contribution 0.744 0.978 -0.383 1.288 sum 2.402 4.330 -1.493 5.172 Atomic orbital electron populations 1.70066 1.09675 1.31685 1.20649 1.27449 0.95944 1.05429 0.93256 0.84791 0.79267 0.73699 0.79856 1.18253 1.19094 1.16630 1.20633 0.97292 0.88813 1.30415 0.85247 1.21205 0.89617 0.92402 0.95656 1.69859 1.06220 1.21077 1.23739 1.22640 0.98266 0.91859 0.97784 1.23377 0.89115 0.96075 0.94935 1.67866 1.42020 0.99153 1.12613 1.24792 0.85674 0.97384 1.00376 1.67841 1.10120 1.29643 1.12655 1.20658 0.89486 0.90070 1.10005 1.67158 1.08206 1.30166 1.15328 1.22176 0.85321 0.88388 0.95675 1.84518 1.12663 1.94950 1.35673 0.88911 0.79924 0.76362 0.72253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -31.23 11.49 21.89 0.25 -30.98 14 2 C 0.01 0.30 5.49 85.39 0.47 0.76 14 3 Si 1.01 29.18 29.57 68.60 2.03 31.21 14 4 H -0.26 -7.27 7.11 99.48 0.71 -6.57 14 5 H -0.27 -7.58 7.11 99.48 0.71 -6.88 14 6 H -0.24 -6.64 7.11 99.48 0.71 -5.93 14 7 C -0.34 -14.80 8.98 23.41 0.21 -14.59 14 8 H 0.13 4.90 7.40 -2.91 -0.02 4.88 14 9 C 0.14 7.05 6.68 41.75 0.28 7.33 14 10 N -0.49 -25.34 8.02 -173.88 -1.39 -26.74 14 11 C 0.04 1.86 6.75 41.88 0.28 2.15 14 12 C 0.15 6.53 11.41 85.41 0.97 7.50 14 13 N -0.50 -20.94 10.34 -198.37 -2.05 -22.99 14 14 C 0.21 8.50 12.18 180.89 2.20 10.70 14 15 N -0.49 -23.55 10.51 -194.67 -2.05 -25.60 14 16 C 0.15 7.66 7.80 136.36 1.06 8.72 14 17 N -0.49 -25.06 10.56 -297.46 -3.14 -28.20 14 18 C 0.30 14.11 7.93 86.92 0.69 14.80 14 19 O -0.47 -17.75 12.78 -84.92 -1.09 -18.83 14 20 H 0.30 11.64 8.29 -92.70 -0.77 10.87 14 21 H 0.18 7.23 8.06 -2.91 -0.02 7.21 14 22 H 0.22 6.81 8.06 -2.91 -0.02 6.79 14 23 H 0.42 10.81 9.06 -74.06 -0.67 10.14 14 Total: -1.00 -63.60 222.67 -0.66 -64.25 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.61 Total: 20.51 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 6.17 Total: 37.37 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -8.38 Total: -134.51 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.09 Total: -18.83 kcal Atomic # 14 Polarization: 29.18 SS G_CDS: 2.03 Total: 31.21 kcal Total: -63.60 -0.66 -64.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117142.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.009 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds