Wall clock time and date at job start Mon Mar 30 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39676 * 120.00129 * 2 1 4 4 C 1.38829 * 119.96378 * 359.97438 * 3 2 1 5 5 C 1.38083 * 119.84644 * 180.02562 * 4 3 2 6 6 C 1.38194 * 120.01926 * 359.96121 * 5 4 3 7 7 C 1.38522 * 120.37213 * 0.10046 * 6 5 4 8 8 C 1.38126 * 119.89234 * 359.89648 * 7 6 5 9 9 C 1.51363 * 109.78913 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.30398 * 101.73694 * 9 8 7 11 11 C 1.50704 * 110.38796 * 223.85240 * 9 8 7 12 12 H 1.08005 * 119.99687 * 358.56645 * 11 9 8 13 13 C 1.37872 * 119.99841 * 178.57213 * 11 9 8 14 14 N 1.31518 * 119.99972 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99975 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47084 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47323 * 119.99503 * 15 13 11 18 18 H 1.48503 * 109.47460 * 239.99669 * 15 13 11 19 19 C 1.54349 * 105.16297 * 342.81429 * 9 8 7 20 20 C 1.51387 * 130.35141 * 179.97438 * 7 6 5 21 21 H 1.09001 * 109.46891 * 299.99385 * 1 2 3 22 22 H 1.08997 * 109.47805 * 60.00277 * 1 2 3 23 23 H 1.09008 * 109.46702 * 180.02562 * 1 2 3 24 24 H 0.97002 * 120.00048 * 180.02562 * 2 1 3 25 25 H 1.07999 * 120.08234 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.99165 * 180.02562 * 5 4 3 27 27 H 1.07998 * 119.81409 * 179.97438 * 6 5 4 28 28 H 0.97010 * 119.99723 * 180.02562 * 14 13 11 29 29 H 1.08999 * 110.82167 * 144.54887 * 19 9 8 30 30 H 1.08994 * 110.82869 * 267.91312 * 19 9 8 31 31 H 1.08999 * 110.30376 * 78.23513 * 20 7 6 32 32 H 1.08998 * 110.30675 * 316.08293 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 1.4685 2.4115 -0.0005 5 6 2.1614 3.6059 -0.0011 6 6 3.5433 3.6035 -0.0003 7 6 4.2416 2.4072 -0.0010 8 6 3.5545 1.2090 -0.0004 9 6 4.5350 0.0559 -0.0008 10 1 4.6222 -0.3668 1.0002 11 6 4.0985 -1.0042 -0.9790 12 1 3.1828 -0.8789 -1.5380 13 6 4.8679 -2.1337 -1.1603 14 7 5.9831 -2.2859 -0.4799 15 14 4.3265 -3.4480 -2.3723 16 1 3.0462 -3.0407 -3.0049 17 1 5.3660 -3.6138 -3.4198 18 1 4.1367 -4.7346 -1.6554 19 6 5.8805 0.6702 -0.4418 20 6 5.7321 2.1422 -0.0009 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 1.9500 -0.8401 -0.0004 25 1 0.3885 2.4124 -0.0014 26 1 1.6232 4.5423 -0.0011 27 1 4.0819 4.5396 -0.0011 28 1 6.5247 -3.0806 -0.6077 29 1 6.7125 0.1931 0.0759 30 1 6.0048 0.5962 -1.5221 31 1 6.1408 2.2805 1.0001 32 1 6.2336 2.8016 -0.7094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158494.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:09 Heat of formation + Delta-G solvation = 1.246309 kcal Electronic energy + Delta-G solvation = -14545.570741 eV Core-core repulsion = 12276.446065 eV Total energy + Delta-G solvation = -2269.124676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.86773 -37.20654 -35.96978 -34.09425 -31.04869 -29.61011 -28.75892 -26.42696 -25.46632 -22.76143 -21.36924 -20.89941 -18.69244 -17.58850 -16.74303 -16.48424 -15.89937 -15.52784 -14.93499 -14.85666 -14.51422 -14.11140 -13.66465 -13.16098 -13.04901 -12.93053 -12.75746 -12.59293 -12.29703 -12.13810 -11.72627 -11.56993 -11.12180 -10.96900 -10.69053 -10.48838 -9.16118 -8.16253 -7.94366 -6.20940 0.75868 0.96481 1.37672 1.40980 1.51039 2.42041 2.90171 3.16474 3.24035 3.95103 4.16816 4.38523 4.45524 4.53006 4.58960 4.69874 4.73439 4.83561 4.90958 4.99779 5.13779 5.24111 5.35448 5.49223 5.58306 5.65000 5.81005 5.86897 5.89051 6.08095 6.30415 6.37001 6.81921 6.88220 7.04148 7.46080 8.97004 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.011993 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.365682 B = 2334.147674 C = 3180.881027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.762 5.762 3 C 0.210 3.790 4 C -0.216 4.216 5 C -0.084 4.084 6 C -0.179 4.179 7 C -0.080 4.080 8 C -0.169 4.169 9 C 0.086 3.914 10 H -0.002 1.002 11 C -0.518 4.518 12 H 0.058 0.942 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.280 1.280 19 C -0.085 4.085 20 C -0.078 4.078 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.403 0.597 25 H 0.136 0.864 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.260 0.740 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 7.936 0.726 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.393 5.393 3 C 0.106 3.894 4 C -0.239 4.239 5 C -0.102 4.102 6 C -0.199 4.199 7 C -0.081 4.081 8 C -0.173 4.173 9 C 0.068 3.932 10 H 0.015 0.985 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.776 3.224 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.206 1.206 19 C -0.123 4.123 20 C -0.115 4.115 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.240 0.760 25 H 0.154 0.846 26 H 0.168 0.832 27 H 0.150 0.850 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.041 7.811 0.753 11.236 hybrid contribution 0.339 -1.497 -0.551 1.631 sum -7.702 6.314 0.202 9.961 Atomic orbital electron populations 1.21624 0.79516 1.03022 1.01007 1.45034 1.06277 1.06004 1.81955 1.17796 0.89756 0.87439 0.94410 1.20738 0.99921 0.90761 1.12468 1.20997 0.93510 0.97826 0.97900 1.20574 0.94463 0.96418 1.08468 1.20718 0.96024 0.93278 0.98089 1.20745 0.92725 0.97177 1.06683 1.18045 0.90190 0.90498 0.94488 0.98453 1.21396 1.07745 1.03407 1.23086 0.92422 1.25709 0.95079 1.00049 0.97426 1.70098 1.14555 1.28595 1.42302 0.85629 0.78349 0.79278 0.79132 1.19259 1.21037 1.20558 1.21981 0.98526 0.93140 0.98657 1.21124 0.91844 0.97101 1.01428 0.92470 0.92965 0.89925 0.76015 0.84577 0.83222 0.84990 0.93079 0.93519 0.94562 0.90469 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.51 9.94 127.77 1.27 3.78 16 2 N -0.76 -29.17 5.39 -360.71 -1.94 -31.11 16 3 C 0.21 8.61 6.51 38.24 0.25 8.86 16 4 C -0.22 -7.29 9.30 22.37 0.21 -7.08 16 5 C -0.08 -2.57 10.04 22.22 0.22 -2.34 16 6 C -0.18 -6.05 10.04 22.33 0.22 -5.83 16 7 C -0.08 -3.29 6.14 -19.60 -0.12 -3.41 16 8 C -0.17 -7.79 5.58 -19.47 -0.11 -7.90 16 9 C 0.09 4.50 2.66 -11.62 -0.03 4.47 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.52 -28.34 6.89 25.60 0.18 -28.16 16 12 H 0.06 3.14 6.53 -2.91 -0.02 3.12 16 13 C 0.02 0.91 5.33 84.65 0.45 1.36 16 14 N -0.92 -52.95 12.40 21.45 0.27 -52.68 16 15 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 C -0.08 -4.16 5.70 31.52 0.18 -3.98 16 20 C -0.08 -3.10 6.77 30.53 0.21 -2.89 16 21 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 22 H 0.05 1.31 7.94 -2.39 -0.02 1.29 16 23 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.40 17.28 6.39 -92.71 -0.59 16.69 16 25 H 0.14 3.78 6.72 -2.91 -0.02 3.76 16 26 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 27 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 29 H 0.05 2.40 7.92 -2.39 -0.02 2.38 16 30 H 0.04 1.87 7.91 -2.39 -0.02 1.85 16 31 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -62.31 261.86 3.80 -58.51 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.52 Total: 22.90 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 2.93 Total: -43.13 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.68 Total: -83.79 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.31 3.80 -58.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158494.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.756 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds