Wall clock time and date at job start Mon Mar 30 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48500 * 109.47085 * 274.98035 * 3 2 1 5 5 H 1.48497 * 109.47519 * 34.98425 * 3 2 1 6 6 H 1.48510 * 109.47165 * 154.98192 * 3 2 1 7 7 C 1.40116 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 186.22638 * 7 2 1 9 9 C 1.41559 * 119.99454 * 6.23593 * 7 2 1 10 10 C 1.40936 * 120.65732 * 173.79470 * 9 7 2 11 11 C 1.38277 * 118.15836 * 179.97438 * 10 9 7 12 12 C 1.50699 * 120.37774 * 179.72317 * 11 10 9 13 13 F 1.39898 * 109.47176 * 89.99586 * 12 11 10 14 14 F 1.39900 * 109.46908 * 209.99755 * 12 11 10 15 15 F 1.39898 * 109.46824 * 329.99426 * 12 11 10 16 16 N 1.32464 * 119.24839 * 359.97438 * 11 10 9 17 17 C 1.32017 * 121.29333 * 0.02562 * 16 11 10 18 18 N 1.31402 * 122.04449 * 0.02562 * 17 16 11 19 19 H 0.97000 * 119.99916 * 0.02562 * 1 2 3 20 20 H 1.08007 * 120.92382 * 359.97438 * 10 9 7 21 21 H 1.08005 * 118.97797 * 180.02562 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0073 -1.2134 0.0005 8 1 3.0825 -1.2161 0.1020 9 6 1.3057 -2.4357 -0.1321 10 6 2.0026 -3.6537 -0.2640 11 6 1.2655 -4.8169 -0.3896 12 6 1.9593 -6.1462 -0.5399 13 9 2.1797 -6.7027 0.7245 14 9 1.1571 -7.0081 -1.2954 15 9 3.1851 -5.9617 -1.1884 16 7 -0.0574 -4.7489 -0.3815 17 6 -0.6839 -3.5936 -0.2564 18 7 -0.0344 -2.4579 -0.1347 19 1 -0.4850 0.8401 -0.0004 20 1 3.0824 -3.6779 -0.2668 21 1 -1.7639 -3.5816 -0.2540 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207767.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:52 Heat of formation + Delta-G solvation = -131.670062 kcal Electronic energy + Delta-G solvation = -14275.886274 eV Core-core repulsion = 11122.049072 eV Total energy + Delta-G solvation = -3153.837202 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -51.16478 -48.69344 -48.62790 -40.99801 -36.15271 -33.85058 -32.87782 -28.92239 -27.30498 -24.46279 -23.42480 -20.32967 -19.55687 -19.53390 -18.74157 -17.12238 -16.92128 -16.05429 -15.70599 -15.53668 -15.42167 -15.09651 -15.00434 -14.81561 -14.79134 -14.51685 -13.51468 -13.10386 -12.92877 -12.75395 -11.94281 -11.75493 -11.20979 -10.85160 -10.30853 -9.65386 -8.53535 -6.92886 0.32361 0.66458 1.42644 1.53719 1.55252 1.59055 2.17047 2.59704 2.65981 3.06421 3.29046 3.71593 3.86206 4.20541 4.47324 4.83159 4.91776 5.03647 5.58428 5.94401 6.32935 6.59035 6.74829 7.93042 8.21660 Molecular weight = 218.04amu Principal moments of inertia in cm(-1) A = 0.052489 B = 0.008534 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.317272 B = 3280.099114 C = 3636.577765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.022 3.978 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.422 4.422 8 H 0.109 0.891 9 C 0.227 3.773 10 C -0.272 4.272 11 C 0.066 3.934 12 C 0.533 3.467 13 F -0.176 7.176 14 F -0.172 7.172 15 F -0.169 7.169 16 N -0.612 5.612 17 C 0.290 3.710 18 N -0.536 5.536 19 H 0.291 0.709 20 H 0.138 0.862 21 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 -1.559 -0.431 4.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.204 4.204 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.455 4.455 8 H 0.127 0.873 9 C 0.100 3.900 10 C -0.302 4.302 11 C -0.074 4.074 12 C 0.477 3.523 13 F -0.157 7.157 14 F -0.153 7.153 15 F -0.151 7.151 16 N -0.336 5.336 17 C -0.001 4.001 18 N -0.256 5.256 19 H 0.102 0.898 20 H 0.155 0.845 21 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.659 -1.479 -0.424 3.072 hybrid contribution 1.009 0.162 -0.043 1.023 sum 3.668 -1.317 -0.466 3.925 Atomic orbital electron populations 1.70117 1.09253 1.30619 1.25378 1.27193 0.95841 1.05074 0.92269 0.84934 0.79186 0.74627 0.79538 1.18679 1.18982 1.17225 1.20293 0.96138 0.89552 1.39548 0.87340 1.19257 0.88790 0.92929 0.89008 1.22379 1.01225 0.93397 1.13155 1.20907 0.92765 0.91936 1.01765 1.17829 0.76359 0.84253 0.73833 1.93174 1.94842 1.86770 1.40937 1.93163 1.73588 1.72174 1.76397 1.93166 1.44908 1.95360 1.81640 1.67770 1.07957 1.31587 1.26239 1.25043 1.01189 0.83021 0.90834 1.69358 1.09054 1.27615 1.19595 0.89830 0.84453 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.78 11.55 21.85 0.25 -35.52 14 2 C 0.02 0.99 5.49 85.32 0.47 1.46 14 3 Si 1.00 33.50 29.56 68.60 2.03 35.53 14 4 H -0.26 -8.60 7.11 99.48 0.71 -7.89 14 5 H -0.27 -8.54 7.11 99.48 0.71 -7.83 14 6 H -0.25 -7.95 7.11 99.48 0.71 -7.24 14 7 C -0.42 -20.63 9.19 23.55 0.22 -20.41 14 8 H 0.11 4.79 7.86 -2.91 -0.02 4.77 14 9 C 0.23 11.85 6.57 40.29 0.26 12.12 14 10 C -0.27 -12.87 9.29 22.94 0.21 -12.66 14 11 C 0.07 3.03 6.32 42.47 0.27 3.30 14 12 C 0.53 20.91 3.45 71.24 0.25 21.15 14 13 F -0.18 -6.63 17.30 44.97 0.78 -5.85 14 14 F -0.17 -6.66 17.07 44.97 0.77 -5.90 14 15 F -0.17 -6.12 16.53 44.97 0.74 -5.38 14 16 N -0.61 -29.19 10.08 -188.35 -1.90 -31.09 14 17 C 0.29 13.87 12.27 180.93 2.22 16.09 14 18 N -0.54 -28.39 8.08 -193.51 -1.56 -29.95 14 19 H 0.29 12.58 8.29 -92.71 -0.77 11.81 14 20 H 0.14 5.81 7.69 -2.91 -0.02 5.79 14 21 H 0.20 7.87 8.06 -2.91 -0.02 7.84 14 Total: -1.00 -56.15 215.97 6.29 -49.86 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.28 Total: 7.25 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 3.90 Total: 21.04 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.21 Total: -96.56 kcal Atomic # 9 Polarization: -19.41 SS G_CDS: 2.29 Total: -17.12 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.53 kcal Total: -56.15 6.29 -49.86 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207767.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.808 kcal (2) G-P(sol) polarization free energy of solvation -56.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds