Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32538 * 124.58161 * 2 1 4 4 C 1.40446 * 115.87519 * 180.02562 * 3 2 1 5 5 C 1.42003 * 128.62869 * 180.29223 * 4 3 2 6 6 C 1.35188 * 120.86943 * 180.18750 * 5 4 3 7 7 C 1.41270 * 120.38822 * 359.49443 * 6 5 4 8 8 C 1.40997 * 120.20200 * 180.22951 * 7 6 5 9 9 H 1.08004 * 120.00320 * 334.42222 * 8 7 6 10 10 C 1.39884 * 120.00033 * 154.41550 * 8 7 6 11 11 N 1.30888 * 119.99931 * 343.17198 * 10 8 7 12 12 Si 1.86796 * 120.00098 * 163.16856 * 10 8 7 13 13 H 1.48499 * 109.47085 * 60.00192 * 12 10 8 14 14 H 1.48496 * 109.47232 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47200 * 300.00405 * 12 10 8 16 16 C 1.40356 * 119.59406 * 0.25578 * 7 6 5 17 17 C 1.38877 * 119.97159 * 359.97438 * 16 7 6 18 18 S 1.75481 * 124.57758 * 179.97438 * 2 1 3 19 19 H 1.08993 * 109.47072 * 89.99558 * 1 2 3 20 20 H 1.08994 * 109.47216 * 210.00319 * 1 2 3 21 21 H 1.09002 * 109.46711 * 329.99656 * 1 2 3 22 22 H 1.07999 * 122.06170 * 0.02562 * 3 2 1 23 23 H 1.08001 * 119.56923 * 359.95755 * 5 4 3 24 24 H 1.07995 * 119.80836 * 179.76899 * 6 5 4 25 25 H 0.96993 * 119.99793 * 179.97438 * 11 10 8 26 26 H 1.08003 * 120.01395 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2593 1.0912 0.0000 4 6 3.6476 0.8786 -0.0006 5 6 4.6918 1.8410 0.0050 6 6 5.9882 1.4578 -0.0003 7 6 6.3281 0.0866 -0.0008 8 6 7.6816 -0.3086 -0.0014 9 1 8.4363 0.3499 -0.4054 10 6 8.0469 -1.5536 0.5213 11 7 7.2187 -2.2064 1.2965 12 14 9.7168 -2.2845 0.1129 13 1 10.7866 -1.3692 0.5852 14 1 9.8587 -3.6010 0.7850 15 1 9.8324 -2.4644 -1.3567 16 6 5.3103 -0.8798 -0.0011 17 6 3.9788 -0.4852 -0.0005 18 16 2.5029 -1.4448 0.0006 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.8311 2.0827 0.0004 23 1 4.4471 2.8929 0.0097 24 1 6.7686 2.2043 0.0002 25 1 7.4719 -3.0699 1.6587 26 1 5.5625 -1.9300 -0.0018 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261229569.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = 6.016943 kcal Electronic energy + Delta-G solvation = -11761.229162 eV Core-core repulsion = 9701.512471 eV Total energy + Delta-G solvation = -2059.716691 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.95772 -36.99065 -35.03882 -32.01306 -31.30112 -28.92696 -25.88977 -23.86309 -22.55976 -20.68758 -19.44791 -17.90176 -16.84214 -16.34550 -15.80192 -15.24416 -14.78601 -14.37763 -14.13823 -13.83272 -13.63113 -13.19432 -12.99242 -12.83972 -12.61274 -12.28419 -11.74045 -11.71527 -11.52746 -11.18652 -10.87921 -10.23573 -9.07286 -8.72370 -8.43447 -6.36532 0.20406 0.92743 0.96911 1.33865 1.38826 1.40205 1.50451 1.82438 2.16504 2.69494 3.59023 4.07666 4.33983 4.55078 4.66879 4.71894 4.83677 4.99513 5.01114 5.16089 5.20164 5.29491 5.42715 5.54335 5.86106 5.93203 6.08540 6.15842 6.51027 6.78382 6.87509 8.22098 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.051220 B = 0.008350 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.526768 B = 3352.528747 C = 3817.773077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.216 4.216 3 C -0.096 4.096 4 C -0.217 4.217 5 C -0.059 4.059 6 C -0.208 4.208 7 C 0.093 3.907 8 C -0.477 4.477 9 H 0.091 0.909 10 C 0.031 3.969 11 N -0.816 5.816 12 Si 0.988 3.012 13 H -0.253 1.253 14 H -0.269 1.269 15 H -0.259 1.259 16 C -0.189 4.189 17 C -0.104 4.104 18 S -0.006 6.006 19 H 0.079 0.921 20 H 0.067 0.933 21 H 0.089 0.911 22 H 0.153 0.847 23 H 0.133 0.867 24 H 0.119 0.881 25 H 0.291 0.709 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 2.411 -1.720 6.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.331 4.331 3 C -0.125 4.125 4 C -0.222 4.222 5 C -0.079 4.079 6 C -0.227 4.227 7 C 0.087 3.913 8 C -0.506 4.506 9 H 0.109 0.891 10 C -0.185 4.185 11 N -0.441 5.441 12 Si 0.808 3.192 13 H -0.176 1.176 14 H -0.194 1.194 15 H -0.183 1.183 16 C -0.215 4.215 17 C -0.218 4.218 18 S 0.255 5.745 19 H 0.097 0.903 20 H 0.086 0.914 21 H 0.108 0.892 22 H 0.170 0.830 23 H 0.151 0.849 24 H 0.137 0.863 25 H 0.102 0.898 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.933 0.709 -1.557 6.174 hybrid contribution 1.210 0.818 0.063 1.462 sum -4.723 1.528 -1.494 5.184 Atomic orbital electron populations 1.20291 0.85559 1.03510 1.03094 1.24056 1.00626 0.93903 1.14472 1.19903 0.91117 0.99607 1.01852 1.18284 0.94325 0.92157 1.17483 1.20622 0.91498 0.98045 0.97712 1.20963 0.96203 0.95544 1.10003 1.17857 0.93676 0.91539 0.88205 1.19911 0.93467 1.02249 1.34981 0.89088 1.26931 1.03583 0.96304 0.91710 1.69920 1.38751 1.13735 1.21670 0.85150 0.76383 0.77914 0.79735 1.17646 1.19352 1.18329 1.20470 0.89255 0.99127 1.12698 1.22660 0.97052 0.96645 1.05493 1.83549 0.96951 1.11417 1.82606 0.90257 0.91389 0.89228 0.82971 0.84906 0.86297 0.89805 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.34 71.24 0.74 -0.92 15 2 C -0.22 -7.81 6.42 24.54 0.16 -7.66 15 3 C -0.10 -3.67 9.97 21.66 0.22 -3.45 15 4 C -0.22 -10.01 5.89 -21.30 -0.13 -10.14 15 5 C -0.06 -2.59 9.99 22.50 0.22 -2.36 15 6 C -0.21 -9.95 9.68 22.31 0.22 -9.74 15 7 C 0.09 5.04 5.56 -21.34 -0.12 4.92 15 8 C -0.48 -25.10 9.03 23.35 0.21 -24.89 15 9 H 0.09 4.45 7.90 -2.91 -0.02 4.43 15 10 C 0.03 1.55 5.14 85.23 0.44 1.99 15 11 N -0.82 -43.07 10.96 21.82 0.24 -42.83 15 12 Si 0.99 37.18 29.59 68.60 2.03 39.21 15 13 H -0.25 -9.00 7.11 99.48 0.71 -8.29 15 14 H -0.27 -9.68 7.11 99.48 0.71 -8.98 15 15 H -0.26 -9.55 7.11 99.48 0.71 -8.85 15 16 C -0.19 -10.53 8.71 22.94 0.20 -10.33 15 17 C -0.10 -5.29 6.46 22.94 0.15 -5.14 15 18 S -0.01 -0.24 23.26 -56.49 -1.31 -1.56 15 19 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.07 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.15 4.68 8.06 -2.91 -0.02 4.65 15 23 H 0.13 4.71 8.06 -2.91 -0.02 4.69 15 24 H 0.12 5.10 8.06 -2.91 -0.02 5.07 15 25 H 0.29 13.91 8.30 -92.71 -0.77 13.14 15 26 H 0.10 5.80 6.18 -2.91 -0.02 5.79 15 Total: -1.00 -60.54 243.30 4.44 -56.10 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.18 Total: 16.79 kcal Atomic # 6 Polarization: -70.01 SS G_CDS: 2.30 Total: -67.70 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.24 Total: -42.83 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.31 Total: -1.56 kcal Total: -60.54 4.44 -56.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261229569.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.114 kcal (2) G-P(sol) polarization free energy of solvation -60.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds