Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39075 * 126.68385 * 2 1 4 4 C 1.39672 * 125.53514 * 359.69628 * 3 2 1 5 5 H 1.08003 * 120.00085 * 0.02562 * 4 3 2 6 6 C 1.40193 * 119.99877 * 180.02562 * 4 3 2 7 7 N 1.30755 * 120.00578 * 359.97438 * 6 4 3 8 8 Si 1.86811 * 119.99966 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46979 * 89.99601 * 8 6 4 10 10 H 1.48492 * 109.47129 * 209.99838 * 8 6 4 11 11 H 1.48499 * 109.46838 * 329.99991 * 8 6 4 12 12 O 1.35149 * 108.92754 * 179.73464 * 3 2 1 13 13 C 1.35069 * 109.89816 * 359.97438 * 12 3 2 14 14 C 1.38529 * 132.73142 * 179.97438 * 13 12 3 15 15 C 1.38679 * 119.89611 * 180.02562 * 14 13 12 16 16 O 1.35773 * 119.70356 * 180.02562 * 15 14 13 17 17 C 1.39456 * 120.59915 * 0.02828 * 15 14 13 18 18 C 1.36373 * 120.40795 * 359.97408 * 17 15 14 19 19 C 1.40386 * 119.81788 * 0.02562 * 18 17 15 20 20 H 1.09005 * 109.46862 * 90.03277 * 1 2 3 21 21 H 1.09002 * 109.47088 * 210.02369 * 1 2 3 22 22 H 1.08999 * 109.47322 * 330.03177 * 1 2 3 23 23 H 0.97001 * 120.00631 * 180.02562 * 7 6 4 24 24 H 1.08004 * 120.05310 * 0.02562 * 14 13 12 25 25 H 0.96699 * 113.99772 * 90.00391 * 16 15 14 26 26 H 1.07998 * 119.79987 * 179.97438 * 17 15 14 27 27 H 1.08003 * 120.08972 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1153 0.0000 4 6 1.9113 2.4453 -0.0060 5 1 0.8557 2.6739 -0.0108 6 6 2.8533 3.4835 -0.0059 7 7 4.1313 3.2069 0.0005 8 14 2.2829 5.2624 -0.0146 9 1 2.1259 5.7387 1.3831 10 1 3.2892 6.1014 -0.7135 11 1 0.9801 5.3609 -0.7205 12 8 3.6249 0.7031 0.0059 13 6 3.6754 -0.6466 0.0104 14 6 4.7273 -1.5479 0.0166 15 6 4.4700 -2.9106 0.0196 16 8 5.5040 -3.7905 0.0262 17 6 3.1588 -3.3854 0.0159 18 6 2.1093 -2.5146 0.0098 19 6 2.3499 -1.1315 0.0066 20 1 -0.3633 -0.0006 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5133 23 1 4.7831 3.9252 0.0010 24 1 5.7463 -1.1899 0.0191 25 1 5.8000 -4.0428 0.9115 26 1 2.9732 -4.4493 0.0179 27 1 1.0959 -2.8879 0.0073 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241017.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = -45.095521 kcal Electronic energy + Delta-G solvation = -14039.758935 eV Core-core repulsion = 11535.072970 eV Total energy + Delta-G solvation = -2504.685965 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.79996 -37.95846 -35.12165 -33.96505 -32.31924 -29.45042 -28.60539 -26.97996 -24.54712 -21.87008 -21.16296 -18.85870 -18.29556 -16.93369 -15.82880 -15.27072 -15.05864 -14.63492 -14.29863 -13.37471 -13.06728 -12.94851 -12.22201 -12.01699 -11.82719 -11.56485 -11.26045 -10.92518 -10.84566 -10.79330 -10.55003 -10.03191 -9.74341 -9.59125 -8.59095 -7.56956 -7.18857 -7.04717 -4.66135 2.00535 2.43047 2.79355 2.87280 2.92773 3.60668 3.63349 4.29111 4.66357 4.94020 5.20172 5.72279 5.82343 6.19231 6.23059 6.39153 6.56251 6.66030 6.73654 6.79122 6.88416 7.00661 7.12378 7.32992 7.47100 7.59984 7.69619 7.83575 8.21260 8.37819 8.41637 8.90243 9.77783 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.044684 B = 0.008608 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.468307 B = 3251.824927 C = 3860.602880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.394 4.394 3 C 0.246 3.754 4 C -0.417 4.417 5 H 0.114 0.886 6 C 0.063 3.937 7 N -0.755 5.755 8 Si 0.929 3.071 9 H -0.263 1.263 10 H -0.272 1.272 11 H -0.255 1.255 12 O -0.168 6.168 13 C -0.012 4.012 14 C -0.106 4.106 15 C 0.026 3.974 16 O -0.498 6.498 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.040 4.040 20 H 0.032 0.968 21 H 0.036 0.964 22 H 0.045 0.955 23 H 0.292 0.708 24 H 0.115 0.885 25 H 0.369 0.631 26 H 0.111 0.889 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -2.008 1.635 2.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.396 4.396 3 C 0.195 3.805 4 C -0.445 4.445 5 H 0.132 0.868 6 C -0.161 4.161 7 N -0.378 5.378 8 Si 0.752 3.248 9 H -0.188 1.188 10 H -0.196 1.196 11 H -0.179 1.179 12 O -0.069 6.069 13 C -0.059 4.059 14 C -0.125 4.125 15 C -0.018 4.018 16 O -0.306 6.306 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.041 4.041 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.133 0.867 25 H 0.221 0.779 26 H 0.129 0.871 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.910 -1.717 1.007 2.189 hybrid contribution -0.024 0.609 0.505 0.791 sum -0.934 -1.108 1.511 2.094 Atomic orbital electron populations 1.19479 0.91184 0.99432 0.98773 1.19600 0.94951 0.90239 1.34830 1.19417 0.78754 0.93466 0.88894 1.19059 0.95635 0.86861 1.42911 0.86847 1.26336 0.94408 1.03335 0.92052 1.69744 1.01968 1.36601 1.29449 0.85931 0.80033 0.79047 0.79780 1.18761 1.19632 1.17862 1.84651 1.28263 1.17108 1.76870 1.19408 0.94540 0.83411 1.08558 1.19766 0.96776 0.90649 1.05339 1.17587 0.86212 0.86752 1.11282 1.84832 1.50804 1.62763 1.32191 1.20575 0.91908 0.98733 1.04391 1.19882 0.97673 0.91154 1.06826 1.18692 0.93062 0.93502 0.98824 0.94957 0.94526 0.93593 0.89704 0.86657 0.77874 0.87144 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.67 10.14 36.00 0.37 -0.30 15 2 C -0.39 -9.91 6.30 -103.23 -0.65 -10.56 15 3 C 0.25 6.61 6.75 -38.74 -0.26 6.35 15 4 C -0.42 -10.45 9.03 -38.31 -0.35 -10.79 15 5 H 0.11 2.60 7.20 -52.48 -0.38 2.22 15 6 C 0.06 1.49 5.50 -17.28 -0.10 1.39 15 7 N -0.75 -18.92 11.96 55.56 0.66 -18.25 15 8 Si 0.93 17.05 29.56 -169.99 -5.03 12.02 15 9 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 10 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 11 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 12 O -0.17 -4.71 8.90 1.17 0.01 -4.70 15 13 C -0.01 -0.31 7.36 -38.38 -0.28 -0.59 15 14 C -0.11 -2.42 9.99 -39.31 -0.39 -2.82 15 15 C 0.03 0.53 6.71 -38.96 -0.26 0.27 15 16 O -0.50 -8.84 13.48 -19.03 -0.26 -9.10 15 17 C -0.14 -2.75 9.91 -39.80 -0.39 -3.14 15 18 C -0.14 -2.95 10.07 -39.45 -0.40 -3.35 15 19 C -0.04 -0.99 6.13 -106.90 -0.66 -1.64 15 20 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.05 0.91 7.49 -51.93 -0.39 0.52 15 23 H 0.29 6.50 8.29 -40.82 -0.34 6.16 15 24 H 0.12 2.46 8.06 -52.48 -0.42 2.04 15 25 H 0.37 4.61 9.06 45.56 0.41 5.02 15 26 H 0.11 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.11 2.09 8.06 -52.48 -0.42 1.67 15 LS Contribution 245.61 15.07 3.70 3.70 Total: -1.00 -29.02 245.61 -5.88 -34.90 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -1.60 Total: 6.61 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -3.37 Total: -25.18 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.66 Total: -18.25 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.25 Total: -13.80 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.02 -5.88 -34.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241017.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.199 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds