Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 O 1.42895 * 109.47477 * 300.00091 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38478 * 122.55701 * 94.73849 * 12 9 7 14 14 C 1.33352 * 114.92919 * 179.76521 * 13 12 9 15 15 S 1.75883 * 109.62189 * 0.47306 * 14 13 12 16 16 C 1.33506 * 122.56010 * 275.03106 * 12 9 7 17 17 Cl 1.73602 * 125.20807 * 0.02562 * 16 12 9 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 0.96701 * 113.99795 * 300.00251 * 11 9 7 20 20 H 1.07996 * 122.53509 * 359.97438 * 13 12 9 21 21 H 1.07997 * 125.19198 * 180.17359 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 1 3.8785 -0.6777 0.8813 11 8 3.9830 -0.5237 -1.1764 12 6 4.0139 -2.6148 -0.0032 13 6 4.3484 -3.2891 -1.1655 14 6 4.7806 -4.5378 -0.9864 15 16 4.7676 -4.9270 0.7288 16 6 4.1651 -3.3214 1.1194 17 17 3.8194 -2.7440 2.7197 18 1 -0.4850 0.8401 0.0004 19 1 3.6942 -0.9296 -2.0052 20 1 4.2686 -2.8367 -2.1429 21 1 5.0870 -5.2095 -1.7746 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261242190.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = -22.872028 kcal Electronic energy + Delta-G solvation = -10695.009150 eV Core-core repulsion = 8495.773796 eV Total energy + Delta-G solvation = -2199.235355 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.32094 -36.06319 -35.05918 -32.32956 -29.67222 -26.94865 -23.80427 -21.76178 -18.46566 -17.76404 -17.19152 -15.61812 -14.87795 -13.84391 -13.36697 -13.27252 -13.16058 -12.78549 -12.23625 -11.69469 -11.24226 -11.05917 -10.78502 -10.75131 -10.38829 -9.90596 -9.31009 -8.85047 -8.69012 -8.17800 -7.82764 -6.16334 -4.28590 1.28014 1.58155 2.19777 2.85643 3.16004 3.42448 3.45661 3.58119 4.46003 5.10249 5.28796 5.72898 5.76999 5.91836 6.35642 6.42515 6.75507 7.25096 7.44723 8.23098 8.72973 8.91296 9.44715 10.93672 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.038485 B = 0.011714 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.379631 B = 2389.811835 C = 2696.694556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.240 3.760 10 H 0.078 0.922 11 O -0.580 6.580 12 C -0.073 4.073 13 C -0.108 4.108 14 C -0.214 4.214 15 S 0.090 5.910 16 C -0.145 4.145 17 Cl -0.015 7.015 18 H 0.266 0.734 19 H 0.362 0.638 20 H 0.145 0.855 21 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -7.310 -0.080 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.119 4.119 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.231 1.231 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.094 0.906 9 C 0.181 3.819 10 H 0.096 0.904 11 O -0.386 6.386 12 C -0.086 4.086 13 C -0.139 4.139 14 C -0.350 4.350 15 S 0.351 5.649 16 C -0.287 4.287 17 Cl 0.013 6.987 18 H 0.076 0.924 19 H 0.209 0.791 20 H 0.163 0.837 21 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.682 -8.069 1.373 12.678 hybrid contribution -0.441 1.621 -1.057 1.985 sum 9.241 -6.448 0.316 11.273 Atomic orbital electron populations 1.69938 1.06555 1.27525 1.48417 1.24969 0.94677 0.99686 0.92573 0.86335 0.79399 0.81903 0.78669 1.20259 1.23090 1.19160 1.21278 0.88339 0.95048 1.53840 0.90586 1.18841 0.94262 0.82676 0.86103 0.90450 1.86438 1.77598 1.57955 1.16655 1.20039 0.97076 1.00996 0.90518 1.19872 1.00800 0.93726 0.99504 1.25468 1.10511 1.00747 0.98229 1.83937 1.66771 1.12534 1.01686 1.24704 1.14897 0.98243 0.90891 1.98330 1.93676 1.87641 1.19049 0.92386 0.79095 0.83704 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.89 14 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 14 3 Si 0.91 22.88 26.19 -169.99 -4.45 18.43 14 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 14 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 14 6 H -0.27 -6.68 6.54 56.52 0.37 -6.31 14 7 C -0.55 -15.02 9.33 -34.44 -0.32 -15.35 14 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 14 9 C 0.24 5.69 2.31 -29.04 -0.07 5.62 14 10 H 0.08 1.94 6.68 -51.93 -0.35 1.59 14 11 O -0.58 -12.96 10.77 -35.23 -0.38 -13.34 14 12 C -0.07 -1.50 4.91 -106.19 -0.52 -2.02 14 13 C -0.11 -1.85 9.43 -41.20 -0.39 -2.24 14 14 C -0.21 -3.13 11.22 29.03 0.33 -2.80 14 15 S 0.09 1.38 23.34 -107.50 -2.51 -1.12 14 16 C -0.14 -2.80 7.07 29.08 0.21 -2.59 14 17 Cl -0.02 -0.30 28.40 -51.86 -1.47 -1.77 14 18 H 0.27 7.52 8.31 -40.82 -0.34 7.18 14 19 H 0.36 6.91 7.65 45.56 0.35 7.25 14 20 H 0.15 2.18 6.90 -52.49 -0.36 1.82 14 21 H 0.17 1.81 8.06 -52.49 -0.42 1.39 14 LS Contribution 218.73 15.07 3.30 3.30 Total: -1.00 -30.34 218.73 -5.98 -36.31 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -0.37 Total: 1.10 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.86 Total: -17.03 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.77 Total: -25.89 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.38 Total: -13.34 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.45 Total: 18.43 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.51 Total: -1.12 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.47 Total: -1.77 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.34 -5.98 -36.31 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242190.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.443 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds