Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 O 1.42895 * 109.47477 * 300.00091 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38478 * 122.55701 * 94.73849 * 12 9 7 14 14 C 1.33352 * 114.92919 * 179.76521 * 13 12 9 15 15 S 1.75883 * 109.62189 * 0.47306 * 14 13 12 16 16 C 1.33506 * 122.56010 * 275.03106 * 12 9 7 17 17 Cl 1.73602 * 125.20807 * 0.02562 * 16 12 9 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 0.96701 * 113.99795 * 300.00251 * 11 9 7 20 20 H 1.07996 * 122.53509 * 359.97438 * 13 12 9 21 21 H 1.07997 * 125.19198 * 180.17359 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 1 3.8785 -0.6777 0.8813 11 8 3.9830 -0.5237 -1.1764 12 6 4.0139 -2.6148 -0.0032 13 6 4.3484 -3.2891 -1.1655 14 6 4.7806 -4.5378 -0.9864 15 16 4.7676 -4.9270 0.7288 16 6 4.1651 -3.3214 1.1194 17 17 3.8194 -2.7440 2.7197 18 1 -0.4850 0.8401 0.0004 19 1 3.6942 -0.9296 -2.0052 20 1 4.2686 -2.8367 -2.1429 21 1 5.0870 -5.2095 -1.7746 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261242190.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = -44.473036 kcal Electronic energy + Delta-G solvation = -10695.945840 eV Core-core repulsion = 8495.773796 eV Total energy + Delta-G solvation = -2200.172045 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.83927 -37.55322 -36.69744 -34.47365 -31.22220 -28.75807 -25.44813 -23.39985 -19.93779 -19.54574 -18.81711 -17.19724 -16.89516 -15.53699 -15.07190 -14.79433 -14.61366 -14.51432 -13.75490 -13.55470 -13.09232 -12.79136 -12.43853 -12.17136 -11.95571 -11.75735 -11.24274 -10.87143 -10.64787 -9.48544 -9.23847 -8.35952 -6.50356 -0.05724 0.25344 0.91719 1.40672 1.42358 1.44752 1.56868 1.75933 2.36639 2.97332 3.96496 4.09384 4.41921 4.48249 4.83998 5.09643 5.35189 5.40389 5.57232 6.08180 6.60526 7.08018 7.27927 8.78063 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.038485 B = 0.011714 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.379631 B = 2389.811835 C = 2696.694556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.037 3.963 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.038 0.962 9 C 0.249 3.751 10 H 0.061 0.939 11 O -0.581 6.581 12 C -0.098 4.098 13 C -0.136 4.136 14 C -0.188 4.188 15 S 0.147 5.853 16 C -0.177 4.177 17 Cl -0.028 7.028 18 H 0.269 0.731 19 H 0.377 0.623 20 H 0.162 0.838 21 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 -8.277 -0.986 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.163 4.163 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.229 1.229 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.056 0.944 9 C 0.190 3.810 10 H 0.078 0.922 11 O -0.389 6.389 12 C -0.112 4.112 13 C -0.166 4.166 14 C -0.324 4.324 15 S 0.408 5.592 16 C -0.319 4.319 17 Cl 0.001 6.999 18 H 0.078 0.922 19 H 0.226 0.774 20 H 0.179 0.821 21 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.418 -9.050 0.457 14.576 hybrid contribution -0.946 1.761 -0.792 2.150 sum 10.471 -7.289 -0.335 12.763 Atomic orbital electron populations 1.70046 1.08077 1.28418 1.50605 1.25701 0.95221 1.02845 0.92571 0.85440 0.78117 0.78329 0.78976 1.19352 1.22881 1.18979 1.21428 0.90602 0.93271 1.52487 0.94381 1.18413 0.91592 0.85083 0.85939 0.92168 1.86353 1.77261 1.58216 1.17075 1.19947 0.98937 0.99779 0.92526 1.19983 1.02625 0.94853 0.99116 1.26021 1.07291 1.00116 0.98953 1.83764 1.64825 1.08766 1.01817 1.25117 1.15670 1.00799 0.90349 1.98316 1.93854 1.88136 1.19613 0.92187 0.77373 0.82060 0.77382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.96 21.45 0.30 -56.83 14 2 C 0.04 2.14 5.47 84.66 0.46 2.60 14 3 Si 0.96 47.20 26.19 68.60 1.80 49.00 14 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 14 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 14 6 H -0.27 -12.81 6.54 99.48 0.65 -12.16 14 7 C -0.54 -30.10 9.33 25.60 0.24 -29.86 14 8 H 0.04 2.37 7.98 -2.92 -0.02 2.34 14 9 C 0.25 11.73 2.31 29.10 0.07 11.79 14 10 H 0.06 3.02 6.68 -2.39 -0.02 3.01 14 11 O -0.58 -25.14 10.77 -148.98 -1.61 -26.75 14 12 C -0.10 -3.91 4.91 -20.88 -0.10 -4.01 14 13 C -0.14 -4.30 9.43 21.22 0.20 -4.10 14 14 C -0.19 -4.72 11.22 66.71 0.75 -3.97 14 15 S 0.15 4.07 23.34 -56.49 -1.32 2.75 14 16 C -0.18 -6.64 7.07 66.75 0.47 -6.17 14 17 Cl -0.03 -1.05 28.40 -2.72 -0.08 -1.13 14 18 H 0.27 15.45 8.31 -92.71 -0.77 14.68 14 19 H 0.38 13.77 7.65 -74.06 -0.57 13.20 14 20 H 0.16 4.41 6.90 -2.91 -0.02 4.39 14 21 H 0.21 3.33 8.06 -2.91 -0.02 3.31 14 Total: -1.00 -65.50 218.73 1.83 -63.68 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 0.64 Total: 3.00 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 2.09 Total: -33.72 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.30 Total: -56.83 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.61 Total: -26.75 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.80 Total: 49.00 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.32 Total: 2.75 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -65.50 1.83 -63.68 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242190.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.202 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds