Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 O 1.42898 * 109.47228 * 60.00083 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38466 * 122.56205 * 264.74127 * 12 9 7 14 14 C 1.33348 * 114.93165 * 179.75914 * 13 12 9 15 15 S 1.75874 * 109.62352 * 0.47524 * 14 13 12 16 16 C 1.33505 * 122.55489 * 85.02289 * 12 9 7 17 17 Cl 1.73602 * 125.21016 * 359.97438 * 16 12 9 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 0.96698 * 113.99738 * 60.00140 * 11 9 7 20 20 H 1.08004 * 122.53498 * 359.96681 * 13 12 9 21 21 H 1.08004 * 125.18809 * 180.22182 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2304 -3.6445 0.0005 13 6 2.6334 -4.2805 -1.1616 14 6 3.5085 -5.2712 -0.9857 15 16 3.8594 -5.4521 0.7282 16 6 2.7715 -4.1271 1.1216 17 17 2.4510 -3.5368 2.7224 18 1 -0.4850 -0.8401 -0.0004 19 1 0.9225 -2.5300 -1.9975 20 1 2.2693 -3.9935 -2.1370 21 1 3.9336 -5.8736 -1.7750 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261242192.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -32.465409 kcal Electronic energy + Delta-G solvation = -10690.654269 eV Core-core repulsion = 8491.002914 eV Total energy + Delta-G solvation = -2199.651355 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.26392 -36.04013 -35.01648 -32.19302 -29.47988 -26.25243 -23.60494 -22.06567 -18.53034 -17.57394 -17.31627 -15.86277 -14.12698 -13.75678 -13.65773 -13.31505 -13.04843 -12.52499 -12.12558 -11.79152 -11.07257 -10.89810 -10.77921 -10.46474 -10.18177 -10.13562 -9.47080 -8.57197 -8.40278 -8.17366 -7.73935 -6.37459 -4.21902 1.28949 1.58961 2.20246 2.87979 3.17639 3.42396 3.44581 3.60850 4.50475 5.26062 5.32567 5.76343 5.88521 5.98412 6.43227 6.45742 6.79617 7.39334 7.88852 8.33274 8.81998 8.96339 9.61575 11.01388 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.035462 B = 0.011143 C = 0.010078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.376959 B = 2512.282856 C = 2777.615900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.632 4.632 8 H 0.051 0.949 9 C 0.261 3.739 10 H 0.069 0.931 11 O -0.575 6.575 12 C -0.073 4.073 13 C -0.109 4.109 14 C -0.215 4.215 15 S 0.085 5.915 16 C -0.148 4.148 17 Cl -0.017 7.017 18 H 0.284 0.716 19 H 0.354 0.646 20 H 0.144 0.856 21 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 -8.813 -0.049 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.171 4.171 3 Si 0.897 3.103 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.670 4.670 8 H 0.070 0.930 9 C 0.202 3.798 10 H 0.086 0.914 11 O -0.380 6.380 12 C -0.087 4.087 13 C -0.140 4.140 14 C -0.350 4.350 15 S 0.345 5.655 16 C -0.290 4.290 17 Cl 0.012 6.988 18 H 0.096 0.904 19 H 0.200 0.800 20 H 0.162 0.838 21 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.844 -8.159 1.407 10.742 hybrid contribution -0.061 -0.688 -1.008 1.222 sum 6.784 -8.848 0.399 11.156 Atomic orbital electron populations 1.70614 1.06888 1.32254 1.42782 1.25781 0.96437 1.02289 0.92638 0.83562 0.74718 0.75106 0.76897 1.21330 1.21432 1.20921 1.22244 0.94380 0.91111 1.59287 0.93047 1.18494 0.86728 0.88563 0.86054 0.91382 1.86534 1.39030 1.96342 1.16122 1.20263 0.99599 0.98424 0.90384 1.19892 0.98345 0.96153 0.99580 1.25465 1.06009 1.05281 0.98227 1.83899 1.46331 1.33555 1.01718 1.24684 1.08911 1.04564 0.90872 1.98324 1.94249 1.87196 1.19058 0.90408 0.79996 0.83847 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.53 55.43 0.75 -26.00 14 2 C 0.04 1.05 5.40 -17.82 -0.10 0.96 14 3 Si 1.07 24.97 29.90 -169.99 -5.08 19.89 14 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 14 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 14 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 7 C -0.63 -17.31 8.75 -34.44 -0.30 -17.61 14 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 14 9 C 0.26 6.55 2.44 -29.03 -0.07 6.48 14 10 H 0.07 1.87 7.50 -51.93 -0.39 1.48 14 11 O -0.58 -14.16 11.73 -35.23 -0.41 -14.58 14 12 C -0.07 -1.57 4.91 -106.19 -0.52 -2.09 14 13 C -0.11 -1.95 9.43 -41.21 -0.39 -2.34 14 14 C -0.21 -3.26 11.22 29.02 0.33 -2.93 14 15 S 0.08 1.34 23.34 -107.50 -2.51 -1.17 14 16 C -0.15 -2.95 7.07 29.08 0.21 -2.75 14 17 Cl -0.02 -0.33 28.40 -51.86 -1.47 -1.80 14 18 H 0.28 8.67 6.47 -40.82 -0.26 8.41 14 19 H 0.35 7.61 7.64 45.56 0.35 7.96 14 20 H 0.14 2.32 6.89 -52.48 -0.36 1.96 14 21 H 0.16 1.89 8.06 -52.48 -0.42 1.47 14 LS Contribution 221.74 15.07 3.34 3.34 Total: -1.00 -30.11 221.74 -6.53 -36.64 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -0.29 Total: 3.97 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.85 Total: -20.29 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.75 Total: -26.00 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.41 Total: -14.58 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.47 Total: -1.80 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -30.11 -6.53 -36.64 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242192.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.172 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds