Wall clock time and date at job start Mon Mar 30 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40528 * 120.01146 * 2 1 4 4 C 1.45574 * 129.18539 * 359.94398 * 3 2 1 5 5 C 1.31702 * 114.88886 * 180.31109 * 4 3 2 6 6 S 1.75268 * 111.51423 * 359.97438 * 5 4 3 7 7 C 1.40143 * 119.03664 * 180.26946 * 3 2 1 8 8 C 1.40467 * 120.16485 * 359.72711 * 7 3 2 9 9 C 1.35677 * 120.82981 * 359.97438 * 8 7 3 10 10 C 1.39906 * 120.00689 * 179.69992 * 2 1 3 11 11 C 1.41275 * 120.06029 * 0.02562 * 10 2 1 12 12 H 1.08005 * 119.99932 * 28.45115 * 11 10 2 13 13 C 1.39856 * 120.00354 * 208.45296 * 11 10 2 14 14 N 1.30906 * 119.99584 * 24.00970 * 13 11 10 15 15 Si 1.86800 * 120.00627 * 204.01243 * 13 11 10 16 16 H 1.48495 * 109.47396 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.46855 * 300.00171 * 15 13 11 18 18 H 1.48505 * 109.46725 * 59.99859 * 15 13 11 19 19 H 1.08998 * 109.47753 * 270.29829 * 1 2 3 20 20 H 1.09001 * 109.46830 * 30.30096 * 1 2 3 21 21 H 1.08998 * 109.47123 * 150.29504 * 1 2 3 22 22 H 1.08002 * 122.55811 * 0.32165 * 4 3 2 23 23 H 1.07997 * 124.24327 * 180.02562 * 5 4 3 24 24 H 1.08007 * 119.58555 * 180.02562 * 8 7 3 25 25 H 1.08003 * 119.94739 * 180.02562 * 9 8 7 26 26 H 0.96996 * 120.00233 * 5.83261 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.2169 0.0000 4 6 1.6928 2.5777 -0.0011 5 6 2.6128 3.5201 -0.0073 6 16 4.2286 2.8411 -0.0117 7 6 3.6111 1.1930 -0.0058 8 6 4.2962 -0.0333 -0.0057 9 6 3.6182 -1.2085 0.0005 10 6 2.2067 -1.2115 0.0063 11 6 1.5017 -2.4358 0.0122 12 1 0.5197 -2.4957 -0.4335 13 6 2.0753 -3.5703 0.5952 14 7 2.9951 -3.4382 1.5172 15 14 1.5291 -5.2740 0.0581 16 1 2.2843 -6.2996 0.8217 17 1 0.0758 -5.4328 0.3185 18 1 1.7935 -5.4439 -1.3933 19 1 -0.3634 0.0053 1.0276 20 1 -0.3633 0.8873 -0.5185 21 1 -0.3633 -0.8926 -0.5092 22 1 0.6355 2.7977 0.0030 23 1 2.3984 4.5786 -0.0085 24 1 5.3762 -0.0407 -0.0097 25 1 4.1594 -2.1431 0.0009 26 1 3.2187 -2.5576 1.8567 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244430.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:33 Heat of formation + Delta-G solvation = 4.120178 kcal Electronic energy + Delta-G solvation = -12028.251701 eV Core-core repulsion = 9968.452760 eV Total energy + Delta-G solvation = -2059.798941 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.19942 -36.89676 -34.64376 -33.44249 -30.16230 -27.89062 -26.69699 -24.03275 -22.22393 -21.40098 -19.34678 -18.06052 -16.94839 -16.16134 -15.62072 -15.43712 -15.16601 -14.63670 -13.93446 -13.63432 -13.42325 -13.37327 -13.03442 -12.83153 -12.52673 -11.98989 -11.87214 -11.68847 -11.55887 -11.13285 -10.83827 -10.06178 -9.27972 -9.21890 -8.49306 -6.38844 0.11426 0.70104 0.92950 1.31672 1.51568 1.54965 1.71989 1.81191 2.34503 2.63001 3.40870 3.97652 4.10215 4.41863 4.52918 4.69190 4.79992 4.85362 4.93377 5.05400 5.17639 5.31433 5.50064 5.54267 5.64651 5.78140 5.86311 6.19675 6.26014 6.72356 6.91245 8.05175 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.051743 B = 0.008840 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.001447 B = 3166.731847 C = 3598.287989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.201 4.201 3 C -0.050 4.050 4 C -0.136 4.136 5 C -0.179 4.179 6 S 0.032 5.968 7 C -0.257 4.257 8 C -0.071 4.071 9 C -0.189 4.189 10 C 0.072 3.928 11 C -0.543 4.543 12 H 0.083 0.917 13 C 0.003 3.997 14 N -0.823 5.823 15 Si 1.116 2.884 16 H -0.275 1.275 17 H -0.256 1.256 18 H -0.264 1.264 19 H 0.048 0.952 20 H 0.064 0.936 21 H 0.054 0.946 22 H 0.157 0.843 23 H 0.197 0.803 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 6.491 -2.456 7.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.206 4.206 3 C -0.057 4.057 4 C -0.167 4.167 5 C -0.312 4.312 6 S 0.291 5.709 7 C -0.371 4.371 8 C -0.093 4.093 9 C -0.210 4.210 10 C 0.068 3.932 11 C -0.571 4.571 12 H 0.101 0.899 13 C -0.212 4.212 14 N -0.447 5.447 15 Si 0.933 3.067 16 H -0.199 1.199 17 H -0.180 1.180 18 H -0.189 1.189 19 H 0.067 0.933 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.174 0.826 23 H 0.214 0.786 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.475 5.586 -2.195 6.021 hybrid contribution -1.249 0.924 -0.018 1.554 sum -1.724 6.511 -2.214 7.089 Atomic orbital electron populations 1.20303 0.90947 1.01213 1.00470 1.19970 0.96040 0.90516 1.14032 1.19348 0.91850 0.93818 1.00669 1.21142 1.01318 0.89840 1.04360 1.25203 0.94611 1.04026 1.07394 1.83255 1.08930 0.96330 1.82402 1.22331 0.96595 0.96937 1.21260 1.19954 0.98311 0.90608 1.00465 1.20890 0.94989 0.96394 1.08723 1.17716 0.91831 0.93494 0.90153 1.20700 1.05599 0.94956 1.35888 0.89887 1.28395 0.91952 1.09108 0.91741 1.70614 1.25236 1.29328 1.19494 0.83012 0.77510 0.68957 0.77212 1.19938 1.18021 1.18881 0.93286 0.91740 0.92738 0.82553 0.78570 0.86956 0.88335 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.95 9.44 71.24 0.67 -2.28 15 2 C -0.20 -9.75 6.00 -18.90 -0.11 -9.86 15 3 C -0.05 -2.26 5.97 -20.37 -0.12 -2.39 15 4 C -0.14 -4.79 9.80 23.47 0.23 -4.56 15 5 C -0.18 -5.51 11.00 67.13 0.74 -4.77 15 6 S 0.03 1.11 23.23 -56.49 -1.31 -0.20 15 7 C -0.26 -11.61 6.51 23.28 0.15 -11.46 15 8 C -0.07 -3.39 9.98 22.22 0.22 -3.17 15 9 C -0.19 -9.85 7.86 22.39 0.18 -9.68 15 10 C 0.07 3.81 5.22 -21.41 -0.11 3.70 15 11 C -0.54 -28.41 8.32 23.41 0.19 -28.22 15 12 H 0.08 4.17 6.33 -2.91 -0.02 4.16 15 13 C 0.00 0.17 4.94 85.22 0.42 0.59 15 14 N -0.82 -44.35 12.40 21.81 0.27 -44.08 15 15 Si 1.12 42.38 29.99 68.60 2.06 44.44 15 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 17 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 19 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 20 H 0.06 2.22 7.28 -2.39 -0.02 2.20 15 21 H 0.05 2.23 6.24 -2.39 -0.01 2.22 15 22 H 0.16 4.59 7.55 -2.91 -0.02 4.57 15 23 H 0.20 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.11 4.78 8.06 -2.91 -0.02 4.76 15 25 H 0.10 5.29 6.67 -2.91 -0.02 5.27 15 26 H 0.28 15.84 6.72 -92.71 -0.62 15.22 15 Total: -1.00 -58.89 237.04 4.81 -54.08 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.34 Total: 17.86 kcal Atomic # 6 Polarization: -74.56 SS G_CDS: 2.46 Total: -72.10 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.27 Total: -44.08 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.06 Total: 44.44 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -1.31 Total: -0.20 kcal Total: -58.89 4.81 -54.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244430.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.197 kcal (2) G-P(sol) polarization free energy of solvation -58.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds