Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47904 * 111.00506 * 2 1 4 4 C 1.54595 * 102.63255 * 265.52769 * 3 2 1 5 5 C 1.51569 * 102.78662 * 334.27379 * 4 3 2 6 6 C 1.39020 * 107.94713 * 16.22576 * 5 4 3 7 7 C 1.39358 * 119.08382 * 180.54608 * 6 5 4 8 8 C 1.37953 * 120.20196 * 359.49623 * 7 6 5 9 9 C 1.38268 * 120.26093 * 359.93718 * 8 7 6 10 10 C 1.37876 * 131.56988 * 195.73807 * 5 4 3 11 11 C 1.50698 * 119.95775 * 359.94915 * 10 5 4 12 12 C 1.50694 * 109.47166 * 84.72465 * 11 10 5 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99792 * 179.72330 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 H 1.08989 * 109.47473 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46659 * 299.96501 * 1 2 3 22 22 H 1.08998 * 109.46944 * 59.95834 * 1 2 3 23 23 H 1.09004 * 110.77554 * 23.81106 * 3 2 1 24 24 H 1.09000 * 110.77623 * 147.05281 * 3 2 1 25 25 H 1.09008 * 110.74137 * 92.82375 * 4 3 2 26 26 H 1.09000 * 110.74162 * 215.96533 * 4 3 2 27 27 H 1.08004 * 119.90091 * 179.52232 * 7 6 5 28 28 H 1.07997 * 119.86912 * 179.97438 * 8 7 6 29 29 H 1.07997 * 120.05311 * 180.19804 * 9 8 7 30 30 H 1.08998 * 109.46890 * 324.72455 * 11 10 5 31 31 H 1.09002 * 109.46875 * 204.72257 * 11 10 5 32 32 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 2.2302 1.6542 -1.5039 5 6 2.4329 0.2631 -2.0706 6 6 1.9708 -0.6530 -1.1326 7 6 2.0585 -2.0148 -1.4155 8 6 2.5879 -2.4415 -2.6158 9 6 3.0339 -1.5218 -3.5469 10 6 2.9524 -0.1683 -3.2726 11 6 3.4378 0.8356 -4.2863 12 6 4.8591 1.2229 -3.9690 13 1 5.3608 0.7861 -3.1181 14 6 5.5193 2.1349 -4.7651 15 7 6.7579 2.4770 -4.4849 16 14 4.6515 2.8908 -6.2364 17 1 3.9570 4.1344 -5.8162 18 1 5.6492 3.2123 -7.2881 19 1 3.6583 1.9267 -6.7744 20 1 -0.3634 -1.0275 -0.0005 21 1 -0.3633 0.5133 0.8903 22 1 -0.3633 0.5145 -0.8896 23 1 1.2674 2.0759 0.4115 24 1 2.9362 1.4352 0.5543 25 1 1.3570 2.1324 -1.9479 26 1 3.1205 2.2652 -1.6529 27 1 1.7105 -2.7382 -0.6930 28 1 2.6537 -3.4982 -2.8292 29 1 3.4448 -1.8596 -4.4868 30 1 2.8037 1.7215 -4.2527 31 1 3.3949 0.3956 -5.2827 32 1 7.2224 3.1183 -5.0452 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = 32.563813 kcal Electronic energy + Delta-G solvation = -14340.195332 eV Core-core repulsion = 12072.428686 eV Total energy + Delta-G solvation = -2267.766647 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30197 -36.56786 -33.48656 -31.94111 -30.36885 -28.71640 -27.20899 -25.56299 -23.07933 -21.81486 -20.72100 -19.25290 -16.80490 -15.98923 -15.70640 -15.05496 -14.75835 -14.19752 -13.61016 -13.30358 -12.91693 -12.60775 -12.20190 -12.06507 -11.78368 -11.75000 -11.65446 -11.08625 -10.91935 -10.74671 -10.43208 -10.06704 -9.86383 -9.41017 -8.95822 -8.59772 -7.83212 -7.46184 -6.08727 -4.07555 1.88713 2.05052 3.26113 3.34404 3.37226 3.98648 4.32569 4.39684 5.06011 5.23450 5.25608 5.29401 5.37248 5.53742 5.56764 5.68958 5.83742 5.88044 6.01364 6.03586 6.16512 6.34165 6.53372 6.65515 6.83428 6.88112 6.96049 7.05568 7.17729 7.31665 7.56089 7.66482 7.78417 8.48904 8.97146 9.51544 11.04190 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.009024 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.160952 B = 3102.002244 C = 3475.736929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.497 5.497 3 C 0.049 3.951 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.075 3.925 7 C -0.134 4.134 8 C -0.110 4.110 9 C -0.133 4.133 10 C -0.004 4.004 11 C 0.016 3.984 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.899 5.899 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.265 1.265 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.022 0.978 31 H 0.027 0.973 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 -4.403 5.570 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.215 5.215 3 C -0.077 4.077 4 C -0.145 4.145 5 C -0.132 4.132 6 C -0.020 4.020 7 C -0.154 4.154 8 C -0.128 4.128 9 C -0.151 4.151 10 C -0.004 4.004 11 C -0.022 4.022 12 C -0.547 4.547 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.538 5.538 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.190 1.190 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.049 0.951 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.671 -4.525 6.030 13.894 hybrid contribution -0.436 0.856 -1.437 1.729 sum -12.108 -3.669 4.593 13.459 Atomic orbital electron populations 1.22420 0.86490 1.02185 1.00630 1.60269 1.07818 1.15057 1.38354 1.23155 1.00813 0.87472 0.96308 1.21587 1.03131 0.95304 0.94527 1.20683 1.03126 0.95001 0.94381 1.19482 0.99453 0.93595 0.89440 1.20197 1.04800 0.92616 0.97757 1.20796 0.99383 0.98989 0.93658 1.20995 1.01686 0.92426 1.00039 1.19622 0.92080 0.94615 0.94131 1.18782 0.97300 0.92922 0.93155 1.20889 0.95043 1.24815 1.13969 0.90843 1.24990 0.94716 0.96096 0.97391 1.69903 1.11032 1.33606 1.39240 0.86831 0.79762 0.80022 0.83073 1.20219 1.21209 1.18971 0.91406 0.91281 0.95106 0.90406 0.89403 0.91093 0.88403 0.86959 0.86425 0.86107 0.96023 0.95524 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.29 60.07 0.56 0.92 16 2 N -0.50 -7.88 5.33 -176.85 -0.94 -8.83 16 3 C 0.05 0.74 7.00 -2.43 -0.02 0.72 16 4 C -0.11 -1.91 6.53 -26.62 -0.17 -2.09 16 5 C -0.13 -2.61 6.05 -104.04 -0.63 -3.23 16 6 C 0.08 1.37 5.59 -83.40 -0.47 0.90 16 7 C -0.13 -2.25 10.07 -39.27 -0.40 -2.65 16 8 C -0.11 -1.83 10.02 -39.67 -0.40 -2.23 16 9 C -0.13 -2.58 9.69 -39.53 -0.38 -2.96 16 10 C 0.00 -0.08 5.06 -104.72 -0.53 -0.61 16 11 C 0.02 0.38 4.01 -29.04 -0.12 0.26 16 12 C -0.51 -14.44 9.65 -34.44 -0.33 -14.77 16 13 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 16 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 20 H 0.07 0.80 8.14 -51.94 -0.42 0.38 16 21 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 26 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 27 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.02 0.51 7.33 -51.93 -0.38 0.13 16 31 H 0.03 0.64 7.11 -51.93 -0.37 0.27 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 267.43 15.07 4.03 4.03 Total: -1.00 -30.91 267.43 -8.33 -39.25 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.54 Total: -0.61 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.98 Total: -23.83 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.17 Total: -35.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.91 -8.33 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.809 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds