Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47904 * 111.00506 * 2 1 4 4 C 1.54595 * 102.63255 * 265.52769 * 3 2 1 5 5 C 1.51569 * 102.78662 * 334.27379 * 4 3 2 6 6 C 1.39020 * 107.94713 * 16.22576 * 5 4 3 7 7 C 1.39358 * 119.08382 * 180.54608 * 6 5 4 8 8 C 1.37953 * 120.20196 * 359.49623 * 7 6 5 9 9 C 1.38268 * 120.26093 * 359.93718 * 8 7 6 10 10 C 1.37876 * 131.56988 * 195.73807 * 5 4 3 11 11 C 1.50698 * 119.95775 * 359.94915 * 10 5 4 12 12 C 1.50694 * 109.47166 * 84.72465 * 11 10 5 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99792 * 179.72330 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 H 1.08989 * 109.47473 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46659 * 299.96501 * 1 2 3 22 22 H 1.08998 * 109.46944 * 59.95834 * 1 2 3 23 23 H 1.09004 * 110.77554 * 23.81106 * 3 2 1 24 24 H 1.09000 * 110.77623 * 147.05281 * 3 2 1 25 25 H 1.09008 * 110.74137 * 92.82375 * 4 3 2 26 26 H 1.09000 * 110.74162 * 215.96533 * 4 3 2 27 27 H 1.08004 * 119.90091 * 179.52232 * 7 6 5 28 28 H 1.07997 * 119.86912 * 179.97438 * 8 7 6 29 29 H 1.07997 * 120.05311 * 180.19804 * 9 8 7 30 30 H 1.08998 * 109.46890 * 324.72455 * 11 10 5 31 31 H 1.09002 * 109.46875 * 204.72257 * 11 10 5 32 32 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 2.2302 1.6542 -1.5039 5 6 2.4329 0.2631 -2.0706 6 6 1.9708 -0.6530 -1.1326 7 6 2.0585 -2.0148 -1.4155 8 6 2.5879 -2.4415 -2.6158 9 6 3.0339 -1.5218 -3.5469 10 6 2.9524 -0.1683 -3.2726 11 6 3.4378 0.8356 -4.2863 12 6 4.8591 1.2229 -3.9690 13 1 5.3608 0.7861 -3.1181 14 6 5.5193 2.1349 -4.7651 15 7 6.7579 2.4770 -4.4849 16 14 4.6515 2.8908 -6.2364 17 1 3.9570 4.1344 -5.8162 18 1 5.6492 3.2123 -7.2881 19 1 3.6583 1.9267 -6.7744 20 1 -0.3634 -1.0275 -0.0005 21 1 -0.3633 0.5133 0.8903 22 1 -0.3633 0.5145 -0.8896 23 1 1.2674 2.0759 0.4115 24 1 2.9362 1.4352 0.5543 25 1 1.3570 2.1324 -1.9479 26 1 3.1205 2.2652 -1.6529 27 1 1.7105 -2.7382 -0.6930 28 1 2.6537 -3.4982 -2.8292 29 1 3.4448 -1.8596 -4.4868 30 1 2.8037 1.7215 -4.2527 31 1 3.3949 0.3956 -5.2827 32 1 7.2224 3.1183 -5.0452 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = 13.337705 kcal Electronic energy + Delta-G solvation = -14341.029039 eV Core-core repulsion = 12072.428686 eV Total energy + Delta-G solvation = -2268.600353 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.64290 -37.94848 -35.39449 -33.69607 -31.85396 -30.11178 -28.92730 -26.70745 -24.88599 -23.30023 -22.10661 -20.75051 -19.00528 -17.32490 -17.06799 -16.47887 -16.28803 -15.90860 -14.99811 -14.89065 -14.39097 -14.14525 -13.73046 -13.53346 -13.50393 -13.09424 -12.82539 -12.73246 -12.57466 -12.12108 -12.02465 -11.90853 -11.67494 -11.39254 -10.81291 -10.28962 -9.36190 -8.79649 -8.32060 -6.36831 0.47703 0.59478 1.32829 1.34823 1.46835 2.32407 2.76398 2.88684 3.01870 3.77113 3.93686 4.10262 4.18573 4.27609 4.35192 4.55759 4.57678 4.68989 4.73715 4.77681 4.87732 4.94786 4.98666 5.06983 5.21541 5.29138 5.51528 5.53380 5.61740 5.81917 5.94374 6.03943 6.24684 6.40894 6.68639 7.26133 8.84621 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.009024 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.160952 B = 3102.002244 C = 3475.736929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.501 5.501 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.159 4.159 6 C 0.073 3.927 7 C -0.132 4.132 8 C -0.100 4.100 9 C -0.151 4.151 10 C -0.041 4.041 11 C 0.025 3.975 12 C -0.513 4.513 13 H 0.023 0.977 14 C 0.009 3.991 15 N -0.948 5.948 16 Si 0.949 3.051 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.248 1.248 20 H 0.077 0.923 21 H 0.096 0.904 22 H 0.026 0.974 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.124 0.876 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 -5.189 5.880 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.219 5.219 3 C -0.072 4.072 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.022 4.022 7 C -0.151 4.151 8 C -0.118 4.118 9 C -0.169 4.169 10 C -0.042 4.042 11 C -0.012 4.012 12 C -0.551 4.551 13 H 0.042 0.958 14 C -0.188 4.188 15 N -0.588 5.588 16 Si 0.772 3.228 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.171 1.171 20 H 0.096 0.904 21 H 0.114 0.886 22 H 0.045 0.955 23 H 0.132 0.868 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.161 0.839 28 H 0.174 0.826 29 H 0.142 0.858 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.165 -5.322 6.355 16.412 hybrid contribution 0.355 1.020 -1.403 1.771 sum -13.810 -4.302 4.952 15.288 Atomic orbital electron populations 1.22551 0.84128 1.03323 1.01774 1.60330 1.09807 1.14945 1.36819 1.23190 1.01704 0.88126 0.94134 1.21599 1.02122 0.94113 0.96839 1.20996 1.03883 0.96681 0.94581 1.19805 0.98867 0.94075 0.89496 1.20625 1.03610 0.92686 0.98205 1.21175 0.97499 1.00369 0.92742 1.21176 1.02465 0.92117 1.01181 1.19611 0.94684 0.95205 0.94703 1.18585 0.94556 0.93878 0.94185 1.21043 0.97177 1.24533 1.12347 0.95819 1.25955 0.95381 0.96564 1.00869 1.70060 1.12991 1.34754 1.41024 0.85679 0.78878 0.79533 0.78752 1.19010 1.20599 1.17108 0.90376 0.88563 0.95484 0.86834 0.90216 0.89856 0.91646 0.83860 0.82649 0.85826 0.95848 0.95286 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.29 127.69 1.19 1.79 16 2 N -0.50 -14.67 5.33 -713.41 -3.80 -18.47 16 3 C 0.06 1.58 7.00 86.65 0.61 2.18 16 4 C -0.11 -3.90 6.53 30.67 0.20 -3.70 16 5 C -0.16 -6.42 6.05 -19.49 -0.12 -6.54 16 6 C 0.07 2.54 5.59 38.29 0.21 2.75 16 7 C -0.13 -4.06 10.07 22.47 0.23 -3.83 16 8 C -0.10 -3.10 10.02 22.21 0.22 -2.87 16 9 C -0.15 -5.79 9.69 22.30 0.22 -5.58 16 10 C -0.04 -1.83 5.06 -19.93 -0.10 -1.93 16 11 C 0.03 1.24 4.01 29.10 0.12 1.36 16 12 C -0.51 -30.42 9.65 25.60 0.25 -30.17 16 13 H 0.02 1.58 7.98 -2.91 -0.02 1.56 16 14 C 0.01 0.55 5.47 84.66 0.46 1.02 16 15 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 16 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 22 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.11 2.40 7.76 -2.38 -0.02 2.38 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.02 1.12 7.33 -2.39 -0.02 1.11 16 31 H 0.03 1.39 7.11 -2.39 -0.02 1.37 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -69.40 267.43 2.89 -66.51 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.03 Total: 10.90 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 3.48 Total: -45.52 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.50 Total: -78.21 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -69.40 2.89 -66.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.845 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds