Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48499 * 109.46852 * 269.99827 * 3 2 1 5 5 H 1.48499 * 109.47180 * 29.99472 * 3 2 1 6 6 H 1.48489 * 109.47454 * 149.99790 * 3 2 1 7 7 C 1.37878 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00416 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99736 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47438 * 59.99724 * 9 7 2 11 11 N 1.46899 * 109.47168 * 299.99846 * 9 7 2 12 12 C 1.50702 * 109.47335 * 180.02562 * 9 7 2 13 13 N 1.29752 * 126.28990 * 74.97421 * 12 9 7 14 14 O 1.41355 * 109.73695 * 180.02562 * 13 12 9 15 15 C 1.34820 * 109.33466 * 0.02562 * 14 13 12 16 16 C 1.38980 * 133.45294 * 180.02562 * 15 14 13 17 17 C 1.37793 * 119.79628 * 179.97438 * 16 15 14 18 18 C 1.38796 * 120.60050 * 359.76001 * 17 16 15 19 19 C 1.36620 * 120.51189 * 0.50454 * 18 17 16 20 20 C 1.39688 * 119.79254 * 359.48053 * 19 18 17 21 21 H 0.96998 * 119.99966 * 0.02562 * 1 2 3 22 22 H 1.00893 * 111.00336 * 300.00210 * 11 9 7 23 23 H 1.00902 * 111.00071 * 63.95853 * 11 9 7 24 24 H 1.07998 * 120.09814 * 0.02562 * 16 15 14 25 25 H 1.07999 * 119.70466 * 179.97438 * 17 16 15 26 26 H 1.07998 * 119.74326 * 180.28275 * 18 17 16 27 27 H 1.08002 * 120.10618 * 179.76307 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8911 11 7 4.0016 -0.5019 -1.1983 12 6 4.0138 -2.6149 0.0010 13 7 4.0146 -3.4291 -1.0093 14 8 4.5640 -4.6721 -0.6202 15 6 4.9136 -4.6180 0.6807 16 6 5.4857 -5.5338 1.5556 17 6 5.7288 -5.1722 2.8629 18 6 5.4121 -3.8985 3.3142 19 6 4.8443 -2.9853 2.4715 20 6 4.5899 -3.3316 1.1424 21 1 -0.4850 0.8400 -0.0004 22 1 3.6784 -0.9596 -2.0374 23 1 3.7323 0.4704 -1.1901 24 1 5.7396 -6.5256 1.2117 25 1 6.1730 -5.8853 3.5416 26 1 5.6128 -3.6284 4.3404 27 1 4.5970 -1.9972 2.8307 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = 65.543104 kcal Electronic energy + Delta-G solvation = -14072.931575 eV Core-core repulsion = 11605.336012 eV Total energy + Delta-G solvation = -2467.595563 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.24172 -37.40643 -35.72275 -32.75751 -31.58146 -30.14013 -29.69336 -26.59643 -23.61464 -22.69551 -22.29467 -19.36307 -17.42790 -16.88323 -16.75096 -15.57243 -15.25634 -15.13780 -14.33093 -13.96707 -13.44732 -13.22939 -12.66030 -12.07932 -12.02337 -11.93308 -11.46813 -11.03190 -10.86151 -10.76478 -10.49238 -10.18086 -9.77411 -8.92509 -8.62172 -8.33676 -7.77826 -6.37454 -4.44493 1.00004 1.53160 2.68467 3.04491 3.10375 3.15773 3.18640 3.87151 4.09107 4.59950 4.74603 4.88778 5.00561 5.04426 5.32467 5.56492 5.69953 5.80767 5.99699 6.21047 6.34644 6.45396 6.53515 6.71794 6.94474 7.17303 7.76733 7.94560 8.08518 8.27827 8.67533 9.17099 10.74711 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.040357 B = 0.008965 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.646258 B = 3122.656727 C = 3357.395562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.243 3.757 10 H 0.068 0.932 11 N -0.848 5.848 12 C 0.187 3.813 13 N -0.286 5.286 14 O -0.114 6.114 15 C 0.081 3.919 16 C -0.135 4.135 17 C -0.070 4.070 18 C -0.161 4.161 19 C -0.031 4.031 20 C -0.183 4.183 21 H 0.270 0.730 22 H 0.342 0.658 23 H 0.325 0.675 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 -5.131 6.111 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.594 4.594 8 H 0.097 0.903 9 C 0.132 3.868 10 H 0.086 0.914 11 N -0.383 5.383 12 C 0.005 3.995 13 N -0.033 5.033 14 O -0.120 6.120 15 C 0.026 3.974 16 C -0.154 4.154 17 C -0.090 4.090 18 C -0.179 4.179 19 C -0.051 4.051 20 C -0.187 4.187 21 H 0.080 0.920 22 H 0.154 0.846 23 H 0.142 0.858 24 H 0.150 0.850 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.703 -5.505 5.067 13.059 hybrid contribution -0.672 1.144 0.531 1.429 sum 10.031 -4.361 5.599 12.288 Atomic orbital electron populations 1.69871 1.06187 1.27572 1.47926 1.24955 0.94923 0.98950 0.93736 0.87025 0.80374 0.83658 0.79017 1.19703 1.21234 1.18175 1.21414 0.88448 0.95595 1.53955 0.90289 1.18149 0.94200 0.82313 0.92116 0.91397 1.59583 1.66940 1.05926 1.05835 1.24826 0.88732 0.97490 0.88458 1.79913 1.16241 0.88805 1.18347 1.89120 1.69775 1.32063 1.21028 1.20357 0.95671 0.94976 0.86390 1.19946 1.04370 0.98890 0.92219 1.21020 0.97304 0.96412 0.94234 1.20716 1.03099 0.93908 1.00201 1.20547 0.93854 1.00056 0.90609 1.20894 1.07580 0.93663 0.96562 0.91966 0.84558 0.85843 0.84956 0.84895 0.85251 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.43 0.77 -24.90 15 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.87 19.81 24.61 -169.99 -4.18 15.62 15 4 H -0.27 -5.94 7.01 56.52 0.40 -5.54 15 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.26 -5.55 6.54 56.52 0.37 -5.18 15 7 C -0.55 -15.14 9.29 -34.44 -0.32 -15.46 15 8 H 0.08 2.43 7.98 -52.49 -0.42 2.01 15 9 C 0.24 5.72 2.76 -70.02 -0.19 5.53 15 10 H 0.07 1.54 7.20 -51.93 -0.37 1.17 15 11 N -0.85 -18.90 9.14 -6.65 -0.06 -18.96 15 12 C 0.19 4.22 6.23 -80.11 -0.50 3.73 15 13 N -0.29 -6.64 12.68 34.91 0.44 -6.20 15 14 O -0.11 -2.42 12.06 7.69 0.09 -2.33 15 15 C 0.08 1.50 7.48 -38.47 -0.29 1.22 15 16 C -0.13 -1.91 10.07 -39.47 -0.40 -2.30 15 17 C -0.07 -0.83 10.02 -39.54 -0.40 -1.23 15 18 C -0.16 -2.04 9.97 -39.96 -0.40 -2.44 15 19 C -0.03 -0.49 10.05 -39.62 -0.40 -0.89 15 20 C -0.18 -3.60 6.33 -105.16 -0.67 -4.26 15 21 H 0.27 7.32 8.31 -40.82 -0.34 6.99 15 22 H 0.34 7.62 8.87 -39.30 -0.35 7.27 15 23 H 0.32 7.09 4.30 -39.29 -0.17 6.92 15 24 H 0.13 1.51 8.06 -52.49 -0.42 1.09 15 25 H 0.13 1.07 8.06 -52.49 -0.42 0.65 15 26 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 27 H 0.13 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 239.66 15.07 3.61 3.61 Total: -1.00 -30.42 239.66 -5.15 -35.58 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -2.17 Total: 11.62 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.65 Total: -14.04 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 1.16 Total: -50.06 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: 0.09 Total: -2.33 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.18 Total: 15.62 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.42 -5.15 -35.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.118 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds