Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48499 * 109.46852 * 269.99827 * 3 2 1 5 5 H 1.48499 * 109.47180 * 29.99472 * 3 2 1 6 6 H 1.48489 * 109.47454 * 149.99790 * 3 2 1 7 7 C 1.37878 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00416 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99736 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47438 * 59.99724 * 9 7 2 11 11 N 1.46899 * 109.47168 * 299.99846 * 9 7 2 12 12 C 1.50702 * 109.47335 * 180.02562 * 9 7 2 13 13 N 1.29752 * 126.28990 * 74.97421 * 12 9 7 14 14 O 1.41355 * 109.73695 * 180.02562 * 13 12 9 15 15 C 1.34820 * 109.33466 * 0.02562 * 14 13 12 16 16 C 1.38980 * 133.45294 * 180.02562 * 15 14 13 17 17 C 1.37793 * 119.79628 * 179.97438 * 16 15 14 18 18 C 1.38796 * 120.60050 * 359.76001 * 17 16 15 19 19 C 1.36620 * 120.51189 * 0.50454 * 18 17 16 20 20 C 1.39688 * 119.79254 * 359.48053 * 19 18 17 21 21 H 0.96998 * 119.99966 * 0.02562 * 1 2 3 22 22 H 1.00893 * 111.00336 * 300.00210 * 11 9 7 23 23 H 1.00902 * 111.00071 * 63.95853 * 11 9 7 24 24 H 1.07998 * 120.09814 * 0.02562 * 16 15 14 25 25 H 1.07999 * 119.70466 * 179.97438 * 17 16 15 26 26 H 1.07998 * 119.74326 * 180.28275 * 18 17 16 27 27 H 1.08002 * 120.10618 * 179.76307 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8911 11 7 4.0016 -0.5019 -1.1983 12 6 4.0138 -2.6149 0.0010 13 7 4.0146 -3.4291 -1.0093 14 8 4.5640 -4.6721 -0.6202 15 6 4.9136 -4.6180 0.6807 16 6 5.4857 -5.5338 1.5556 17 6 5.7288 -5.1722 2.8629 18 6 5.4121 -3.8985 3.3142 19 6 4.8443 -2.9853 2.4715 20 6 4.5899 -3.3316 1.1424 21 1 -0.4850 0.8400 -0.0004 22 1 3.6784 -0.9596 -2.0374 23 1 3.7323 0.4704 -1.1901 24 1 5.7396 -6.5256 1.2117 25 1 6.1730 -5.8853 3.5416 26 1 5.6128 -3.6284 4.3404 27 1 4.5970 -1.9972 2.8307 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = 42.291548 kcal Electronic energy + Delta-G solvation = -14073.939838 eV Core-core repulsion = 11605.336012 eV Total energy + Delta-G solvation = -2468.603826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.68151 -38.62785 -37.54139 -34.60044 -33.39463 -31.38178 -30.98300 -28.56798 -25.44477 -23.98844 -23.57341 -20.97942 -19.34161 -18.35171 -18.23067 -17.24501 -16.80533 -16.37169 -16.17618 -15.40593 -14.90744 -14.76055 -14.39874 -13.80853 -13.37549 -13.20833 -13.05296 -12.91346 -12.36553 -12.22972 -12.01746 -11.84019 -11.74675 -11.00107 -9.89723 -9.72380 -9.51822 -8.49277 -6.63617 -0.27644 0.34093 1.16144 1.24885 1.30766 1.41373 1.66941 2.15381 2.69243 2.80671 3.14351 3.38725 3.66738 3.92674 4.11663 4.29806 4.35653 4.49950 4.59845 4.93324 5.00969 5.14545 5.21712 5.36577 5.43882 5.79369 5.84233 6.13678 6.35518 6.37849 6.46791 7.02597 8.67220 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.040357 B = 0.008965 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.646258 B = 3122.656727 C = 3357.395562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.234 1.234 7 C -0.562 4.562 8 H 0.023 0.977 9 C 0.250 3.750 10 H 0.081 0.919 11 N -0.838 5.838 12 C 0.166 3.834 13 N -0.325 5.325 14 O -0.126 6.126 15 C 0.050 3.950 16 C -0.135 4.135 17 C -0.048 4.048 18 C -0.142 4.142 19 C -0.051 4.051 20 C -0.217 4.217 21 H 0.275 0.725 22 H 0.340 0.660 23 H 0.329 0.671 24 H 0.161 0.839 25 H 0.187 0.813 26 H 0.173 0.827 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.010 -5.144 8.460 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.157 1.157 7 C -0.603 4.603 8 H 0.042 0.958 9 C 0.139 3.861 10 H 0.098 0.902 11 N -0.372 5.372 12 C -0.014 4.014 13 N -0.071 5.071 14 O -0.135 6.135 15 C -0.004 4.004 16 C -0.155 4.155 17 C -0.066 4.066 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.221 4.221 21 H 0.084 0.916 22 H 0.152 0.848 23 H 0.146 0.854 24 H 0.179 0.821 25 H 0.205 0.795 26 H 0.191 0.809 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.319 -5.520 7.418 16.214 hybrid contribution -1.472 0.956 -0.066 1.757 sum 11.847 -4.564 7.353 14.671 Atomic orbital electron populations 1.70025 1.08349 1.29026 1.49317 1.25899 0.95711 1.03168 0.92723 0.85909 0.79669 0.77860 0.80204 1.17905 1.20818 1.15747 1.21493 0.90675 0.93732 1.54369 0.95816 1.17966 0.91547 0.83697 0.92841 0.90169 1.59562 1.66294 1.06021 1.05321 1.24856 0.89293 0.97133 0.90168 1.79769 1.17558 0.90016 1.19772 1.89016 1.70408 1.30959 1.23071 1.20999 0.97551 0.96081 0.85722 1.20523 1.03131 0.99312 0.92488 1.21702 0.94521 0.96833 0.93585 1.21288 0.99989 0.93281 1.01424 1.20852 0.95059 1.01575 0.89620 1.21045 1.09482 0.94006 0.97550 0.91579 0.84766 0.85411 0.82131 0.79549 0.80927 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.45 0.30 -55.88 15 2 C 0.03 1.45 5.47 84.65 0.46 1.92 15 3 Si 0.94 40.48 24.61 68.60 1.69 42.17 15 4 H -0.25 -10.23 7.01 99.48 0.70 -9.54 15 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 15 6 H -0.23 -9.17 6.54 99.48 0.65 -8.52 15 7 C -0.56 -32.17 9.29 25.60 0.24 -31.93 15 8 H 0.02 1.56 7.98 -2.91 -0.02 1.54 15 9 C 0.25 12.02 2.76 43.42 0.12 12.14 15 10 H 0.08 3.61 7.20 -2.39 -0.02 3.60 15 11 N -0.84 -37.26 9.14 -174.96 -1.60 -38.86 15 12 C 0.17 7.82 6.23 45.04 0.28 8.10 15 13 N -0.32 -15.88 12.68 -43.47 -0.55 -16.44 15 14 O -0.13 -5.57 12.06 29.88 0.36 -5.21 15 15 C 0.05 1.85 7.48 22.99 0.17 2.03 15 16 C -0.14 -3.41 10.07 22.34 0.23 -3.19 15 17 C -0.05 -0.87 10.02 22.30 0.22 -0.65 15 18 C -0.14 -2.93 9.97 22.02 0.22 -2.71 15 19 C -0.05 -1.55 10.05 22.24 0.22 -1.32 15 20 C -0.22 -8.58 6.33 -20.22 -0.13 -8.70 15 21 H 0.27 15.30 8.31 -92.71 -0.77 14.52 15 22 H 0.34 15.49 8.87 -89.70 -0.80 14.69 15 23 H 0.33 13.86 4.30 -89.69 -0.39 13.48 15 24 H 0.16 3.06 8.06 -2.91 -0.02 3.04 15 25 H 0.19 1.53 8.06 -2.91 -0.02 1.50 15 26 H 0.17 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.14 3.91 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -71.67 239.66 2.20 -69.47 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.03 Total: 29.07 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 2.04 Total: -24.32 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -1.85 Total: -111.17 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.36 Total: -5.21 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.69 Total: 42.17 kcal Total: -71.67 2.20 -69.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.759 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds