Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48498 * 109.47036 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47009 * 120.00101 * 3 2 1 7 7 C 1.37879 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 N 1.29904 * 124.85581 * 74.69466 * 12 9 7 14 14 C 1.36054 * 108.80294 * 179.83548 * 13 12 9 15 15 C 1.39586 * 133.80868 * 180.11410 * 14 13 12 16 16 C 1.37688 * 119.73044 * 180.33161 * 15 14 13 17 17 C 1.38722 * 120.41985 * 0.02562 * 16 15 14 18 18 C 1.37910 * 120.47723 * 359.97438 * 17 16 15 19 19 C 1.38663 * 119.87450 * 0.03591 * 18 17 16 20 20 O 1.34228 * 124.85527 * 254.99723 * 12 9 7 21 21 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 23 23 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 24 24 H 1.07997 * 120.13826 * 0.30850 * 15 14 13 25 25 H 1.07993 * 119.78783 * 179.97438 * 16 15 14 26 26 H 1.07996 * 119.75796 * 179.97438 * 17 16 15 27 27 H 1.07999 * 120.05935 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1975 12 6 2.2304 -3.6446 -0.0027 13 7 2.9267 -4.0269 1.0251 14 6 3.6981 -5.0873 0.6623 15 6 4.6205 -5.8875 1.3385 16 6 5.2584 -6.9083 0.6700 17 6 4.9904 -7.1454 -0.6703 18 6 4.0815 -6.3628 -1.3510 19 6 3.4301 -5.3303 -0.6935 20 8 2.5121 -4.4120 -1.0673 21 1 -0.4850 0.8400 0.0004 22 1 0.9639 -2.5269 2.0368 23 1 -0.3012 -1.8583 1.1891 24 1 4.8333 -5.7065 2.3817 25 1 5.9724 -7.5277 1.1922 26 1 5.4971 -7.9487 -1.1843 27 1 3.8777 -6.5537 -2.3942 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254820.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = 8.512314 kcal Electronic energy + Delta-G solvation = -13943.810511 eV Core-core repulsion = 11473.741907 eV Total energy + Delta-G solvation = -2470.068603 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.12162 -38.91222 -37.02867 -35.40247 -33.38937 -31.57069 -30.41574 -28.32721 -25.75303 -23.89481 -23.01325 -22.02714 -19.03509 -18.82595 -18.24095 -17.47634 -17.08506 -16.31001 -15.78324 -15.05062 -14.89154 -14.68222 -14.56085 -13.48691 -13.41082 -13.09184 -13.04585 -12.86123 -12.39910 -12.32197 -12.21281 -11.94706 -11.33029 -10.84111 -9.75708 -9.51664 -9.28290 -8.29259 -6.54590 -0.19476 0.29240 1.37312 1.38749 1.46666 1.57441 1.63699 2.33056 2.73756 2.93657 3.06612 3.62444 4.03084 4.20020 4.28455 4.37351 4.41996 4.56175 4.90244 5.01122 5.16288 5.38492 5.41563 5.44070 5.49032 5.71828 5.83784 6.36772 6.62562 6.81377 6.93683 7.20751 8.69520 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.049104 B = 0.007371 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.077367 B = 3797.888833 C = 3904.400261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.034 3.966 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.569 4.569 8 H 0.044 0.956 9 C 0.298 3.702 10 H 0.046 0.954 11 N -0.832 5.832 12 C 0.283 3.717 13 N -0.510 5.510 14 C -0.010 4.010 15 C -0.086 4.086 16 C -0.106 4.106 17 C -0.088 4.088 18 C -0.100 4.100 19 C -0.042 4.042 20 O -0.237 6.237 21 H 0.277 0.723 22 H 0.329 0.671 23 H 0.361 0.639 24 H 0.142 0.858 25 H 0.179 0.821 26 H 0.186 0.814 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 -11.286 -0.673 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.169 4.169 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.609 4.609 8 H 0.062 0.938 9 C 0.187 3.813 10 H 0.064 0.936 11 N -0.365 5.365 12 C 0.072 3.928 13 N -0.240 5.240 14 C -0.122 4.122 15 C -0.105 4.105 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.092 4.092 20 O -0.129 6.129 21 H 0.086 0.914 22 H 0.139 0.861 23 H 0.179 0.821 24 H 0.160 0.840 25 H 0.197 0.803 26 H 0.203 0.797 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.681 -11.633 -0.371 14.520 hybrid contribution 0.327 1.869 -0.506 1.964 sum 9.008 -9.764 -0.878 13.314 Atomic orbital electron populations 1.69781 1.06782 1.29087 1.48759 1.25690 0.95968 1.02323 0.92891 0.85389 0.78339 0.77840 0.78762 1.19841 1.19519 1.19877 1.21598 0.93174 0.91130 1.55025 0.93784 1.17345 0.87135 0.83724 0.93136 0.93640 1.59155 1.17901 1.56032 1.03441 1.27341 0.95167 0.91774 0.78544 1.70553 1.10880 1.13425 1.29126 1.20674 1.01282 0.96882 0.93333 1.20669 0.94375 0.94548 1.00901 1.21531 0.99542 0.96450 0.94907 1.21539 0.95604 0.98948 0.94472 1.20370 0.97438 0.92474 1.01555 1.21146 0.95978 0.95709 0.96362 1.84475 1.50200 1.38292 1.39920 0.91352 0.86066 0.82128 0.84014 0.80333 0.79672 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.89 11.54 21.45 0.25 -48.64 15 2 C 0.03 1.80 5.38 84.65 0.46 2.25 15 3 Si 0.97 42.70 29.54 68.60 2.03 44.73 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 7 C -0.57 -32.04 8.71 25.60 0.22 -31.82 15 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.30 16.12 3.25 43.42 0.14 16.26 15 10 H 0.05 2.61 8.14 -2.39 -0.02 2.59 15 11 N -0.83 -42.36 9.17 -174.94 -1.61 -43.96 15 12 C 0.28 14.56 7.03 88.39 0.62 15.18 15 13 N -0.51 -25.13 11.12 -296.27 -3.29 -28.42 15 14 C -0.01 -0.43 7.24 39.32 0.28 -0.15 15 15 C -0.09 -2.61 10.10 22.47 0.23 -2.38 15 16 C -0.11 -2.17 10.02 22.26 0.22 -1.95 15 17 C -0.09 -1.73 10.03 22.31 0.22 -1.50 15 18 C -0.10 -2.79 10.06 22.29 0.22 -2.57 15 19 C -0.04 -1.70 7.43 22.88 0.17 -1.53 15 20 O -0.24 -11.37 10.77 -9.98 -0.11 -11.48 15 21 H 0.28 14.00 8.31 -92.71 -0.77 13.23 15 22 H 0.33 16.59 8.80 -89.69 -0.79 15.80 15 23 H 0.36 18.70 7.08 -89.70 -0.63 18.07 15 24 H 0.14 3.82 8.06 -2.91 -0.02 3.80 15 25 H 0.18 1.99 8.06 -2.91 -0.02 1.97 15 26 H 0.19 1.78 8.06 -2.91 -0.02 1.76 15 27 H 0.15 3.44 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -65.62 245.00 -0.15 -65.77 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.21 Total: 30.22 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 2.79 Total: -8.20 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -4.65 Total: -121.03 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.11 Total: -11.48 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.62 -0.15 -65.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254820.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.278 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds