Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.37728 * 120.13478 * 264.72394 * 12 9 7 14 14 C 1.38677 * 120.41733 * 179.73095 * 13 12 9 15 15 C 1.37945 * 120.47708 * 0.56330 * 14 13 12 16 16 C 1.38629 * 119.87447 * 359.71285 * 15 14 13 17 17 O 1.35114 * 133.95104 * 180.02562 * 16 15 14 18 18 C 1.34236 * 108.16092 * 179.97438 * 17 16 15 19 19 N 1.29906 * 110.29833 * 0.02562 * 18 17 16 20 20 C 1.36067 * 108.79532 * 0.02562 * 19 18 17 21 21 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 23 23 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 24 24 H 1.08002 * 119.78688 * 0.02562 * 13 12 9 25 25 H 1.07996 * 119.76065 * 180.30197 * 14 13 12 26 26 H 1.07998 * 120.06213 * 179.68866 * 15 14 13 27 27 H 1.08005 * 124.84796 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5964 -4.2413 -1.1856 14 6 3.5013 -5.2922 -1.1929 15 6 4.0381 -5.7615 -0.0120 16 6 3.6764 -5.1763 1.1916 17 8 4.0144 -5.3978 2.4809 18 6 3.3498 -4.5166 3.2449 19 7 2.6076 -3.7486 2.5053 20 6 2.7645 -4.1097 1.2029 21 1 -0.4850 0.8400 -0.0004 22 1 0.9652 -2.5259 -2.0381 23 1 -0.1571 -3.4138 -1.1907 24 1 2.1797 -3.8855 -2.1162 25 1 3.7846 -5.7491 -2.1295 26 1 4.7384 -6.5835 -0.0251 27 1 3.4218 -4.4550 4.3208 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = 18.987113 kcal Electronic energy + Delta-G solvation = -14202.990407 eV Core-core repulsion = 11733.376025 eV Total energy + Delta-G solvation = -2469.614382 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.07227 -39.39324 -36.27121 -35.51824 -33.66071 -30.74208 -30.55997 -28.04460 -25.17205 -23.94874 -23.63522 -21.39863 -18.93001 -18.49031 -18.12061 -17.52676 -17.00167 -16.55692 -16.07267 -15.19441 -14.82153 -14.57814 -14.29551 -13.75007 -13.40270 -12.91196 -12.79878 -12.59314 -12.41142 -12.38350 -11.89481 -11.30196 -11.25404 -10.57933 -9.68650 -9.25416 -8.93883 -7.99761 -6.21049 -0.11171 0.32912 1.38907 1.39877 1.51161 1.63413 1.75562 2.43291 2.78758 3.22846 3.28228 3.64611 4.06781 4.22821 4.30403 4.38324 4.47797 4.58394 5.05446 5.10875 5.22421 5.35287 5.44315 5.66053 5.72056 5.84226 6.17019 6.62133 6.77465 7.07104 7.23168 7.49760 9.04009 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.009915 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.515990 B = 2823.391967 C = 3198.190814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.035 0.965 9 C 0.268 3.732 10 H 0.005 0.995 11 N -0.818 5.818 12 C -0.051 4.051 13 C -0.145 4.145 14 C -0.073 4.073 15 C -0.115 4.115 16 C -0.008 4.008 17 O -0.223 6.223 18 C 0.227 3.773 19 N -0.520 5.520 20 C -0.013 4.013 21 H 0.256 0.744 22 H 0.328 0.672 23 H 0.313 0.687 24 H 0.140 0.860 25 H 0.181 0.819 26 H 0.166 0.834 27 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 -11.964 0.574 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.169 4.169 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.053 0.947 9 C 0.158 3.842 10 H 0.022 0.978 11 N -0.346 5.346 12 C -0.054 4.054 13 C -0.165 4.165 14 C -0.091 4.091 15 C -0.134 4.134 16 C -0.059 4.059 17 O -0.115 6.115 18 C -0.004 4.004 19 N -0.248 5.248 20 C -0.124 4.124 21 H 0.065 0.935 22 H 0.142 0.858 23 H 0.125 0.875 24 H 0.158 0.842 25 H 0.198 0.802 26 H 0.183 0.817 27 H 0.320 0.680 Dipole moment (debyes) X Y Z Total from point charges 7.342 -10.674 1.025 12.996 hybrid contribution 1.008 -0.133 0.011 1.017 sum 8.351 -10.807 1.035 13.697 Atomic orbital electron populations 1.70235 1.06973 1.26339 1.48079 1.25661 0.95491 1.01745 0.93962 0.85666 0.78737 0.80246 0.77802 1.19964 1.19928 1.20665 1.20911 0.91360 0.90960 1.53779 0.94710 1.17644 0.87576 0.89315 0.89708 0.97756 1.58930 1.28368 1.43251 1.04076 1.20994 0.97482 0.96226 0.90721 1.21116 1.00441 0.97998 0.96926 1.21408 0.94331 0.94846 0.98522 1.20189 1.03876 1.02728 0.86562 1.20783 1.00118 0.99556 0.85409 1.84472 1.59186 1.52424 1.15429 1.29385 0.87183 0.83213 1.00599 1.70600 1.24385 1.27242 1.02524 1.19975 1.01785 0.98297 0.92338 0.93478 0.85811 0.87540 0.84192 0.80213 0.81658 0.68000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.76 12.77 21.45 0.27 -53.49 15 2 C 0.03 2.03 5.39 84.65 0.46 2.49 15 3 Si 0.95 45.88 29.54 68.60 2.03 47.91 15 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 15 5 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 15 7 C -0.53 -31.21 8.71 25.60 0.22 -30.99 15 8 H 0.03 2.09 7.74 -2.91 -0.02 2.07 15 9 C 0.27 14.35 2.86 43.42 0.12 14.48 15 10 H 0.00 0.29 8.12 -2.39 -0.02 0.27 15 11 N -0.82 -39.48 8.13 -174.95 -1.42 -40.91 15 12 C -0.05 -2.30 5.01 -19.67 -0.10 -2.40 15 13 C -0.15 -5.13 9.26 22.25 0.21 -4.92 15 14 C -0.07 -1.96 10.03 22.31 0.22 -1.74 15 15 C -0.11 -3.19 10.06 22.29 0.22 -2.97 15 16 C -0.01 -0.30 7.43 22.87 0.17 -0.13 15 17 O -0.22 -6.93 10.77 -10.00 -0.11 -7.04 15 18 C 0.23 6.72 13.12 130.53 1.71 8.44 15 19 N -0.52 -22.19 11.34 -308.42 -3.50 -25.69 15 20 C -0.01 -0.59 6.93 39.31 0.27 -0.31 15 21 H 0.26 14.81 8.31 -92.71 -0.77 14.04 15 22 H 0.33 14.46 7.21 -89.70 -0.65 13.81 15 23 H 0.31 13.45 9.06 -89.69 -0.81 12.63 15 24 H 0.14 4.51 6.27 -2.91 -0.02 4.49 15 25 H 0.18 3.03 8.06 -2.91 -0.02 3.00 15 26 H 0.17 3.22 8.06 -2.91 -0.02 3.19 15 27 H 0.31 4.57 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -76.75 243.55 0.55 -76.20 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.24 Total: 21.08 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.51 Total: -18.06 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -4.64 Total: -120.09 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.11 Total: -7.04 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.75 0.55 -76.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.186 kcal (2) G-P(sol) polarization free energy of solvation -76.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds