Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34093 * 124.99823 * 2 1 4 4 C 1.46827 * 106.12517 * 179.97438 * 3 2 1 5 5 C 1.39973 * 134.06324 * 180.02562 * 4 3 2 6 6 C 1.37927 * 120.24923 * 179.97438 * 5 4 3 7 7 C 1.38693 * 120.51456 * 0.27765 * 6 5 4 8 8 O 1.35633 * 119.89762 * 179.72231 * 7 6 5 9 9 C 1.41206 * 120.20769 * 359.43322 * 7 6 5 10 10 C 1.40874 * 120.31411 * 180.27653 * 9 7 6 11 11 H 1.08004 * 119.99838 * 31.99669 * 10 9 7 12 12 C 1.39895 * 120.00288 * 212.00359 * 10 9 7 13 13 N 1.30924 * 119.99583 * 20.04986 * 12 10 9 14 14 Si 1.86798 * 120.00147 * 200.05420 * 12 10 9 15 15 H 1.48494 * 109.47063 * 89.99829 * 14 12 10 16 16 H 1.48506 * 109.46959 * 209.99924 * 14 12 10 17 17 H 1.48502 * 109.46982 * 329.99453 * 14 12 10 18 18 C 1.39900 * 105.49621 * 359.97438 * 4 3 2 19 19 O 1.34404 * 125.00058 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47022 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47315 * 299.97152 * 1 2 3 22 22 H 1.08997 * 109.47284 * 59.97535 * 1 2 3 23 23 H 1.08000 * 126.93422 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.87524 * 0.02562 * 5 4 3 25 25 H 1.08001 * 119.74207 * 179.97438 * 6 5 4 26 26 H 0.96698 * 114.00039 * 85.58391 * 8 7 6 27 27 H 0.96998 * 119.99557 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0985 0.0000 4 6 3.6654 0.6235 0.0006 5 6 4.9118 1.2604 0.0014 6 6 6.0727 0.5155 0.0024 7 6 6.0201 -0.8704 -0.0031 8 8 7.1695 -1.5906 -0.0078 9 6 4.7738 -1.5342 0.0022 10 6 4.7178 -2.9418 0.0025 11 1 5.4911 -3.5129 0.4949 12 6 3.6607 -3.6000 -0.6350 13 7 2.9547 -2.9765 -1.5443 14 14 3.2565 -5.3683 -0.1887 15 1 2.2703 -5.3856 0.9213 16 1 2.6824 -6.0585 -1.3717 17 1 4.4955 -6.0665 0.2388 18 6 3.5830 -0.7731 0.0016 19 8 2.2779 -1.1010 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5134 0.8902 22 1 -0.3634 0.5142 -0.8897 23 1 1.9411 2.1252 0.0004 24 1 4.9648 2.3390 0.0020 25 1 7.0300 1.0154 0.0025 26 1 7.5402 -1.7453 0.8718 27 1 2.2215 -3.4327 -1.9861 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -47.908295 kcal Electronic energy + Delta-G solvation = -14436.337836 eV Core-core repulsion = 11931.529900 eV Total energy + Delta-G solvation = -2504.807936 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.79990 -39.33702 -36.39544 -35.72904 -33.48110 -31.49481 -31.02685 -27.11731 -26.92556 -23.49345 -22.13038 -21.52459 -19.27810 -18.79021 -17.54465 -16.93869 -16.66443 -16.53761 -15.78084 -14.88721 -14.79602 -14.16930 -13.85501 -13.73729 -13.45493 -13.33893 -12.86316 -12.81865 -12.55473 -12.32303 -12.09429 -11.77829 -11.22443 -10.83071 -10.31704 -9.12605 -8.84282 -8.55183 -6.35663 0.43366 0.94086 1.32854 1.37427 1.47756 1.76706 2.17200 2.36814 2.68803 3.38332 3.82183 3.96653 4.32946 4.50887 4.55291 4.62837 4.75870 4.78528 4.91679 5.04999 5.19006 5.28443 5.64764 5.75263 5.79506 5.96246 6.17966 6.28773 6.49551 6.77132 6.91247 7.36447 8.26024 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.016524 C = 0.009717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.273540 B = 1694.048453 C = 2880.971949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.002 4.002 3 C -0.245 4.245 4 C -0.138 4.138 5 C -0.199 4.199 6 C -0.113 4.113 7 C -0.046 4.046 8 O -0.493 6.493 9 C 0.078 3.922 10 C -0.484 4.484 11 H 0.084 0.916 12 C 0.033 3.967 13 N -0.803 5.803 14 Si 0.984 3.016 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.255 1.255 18 C -0.002 4.002 19 O -0.180 6.180 20 H 0.070 0.930 21 H 0.108 0.892 22 H 0.102 0.898 23 H 0.172 0.828 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.374 0.626 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 2.896 3.519 6.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.052 4.052 3 C -0.264 4.264 4 C -0.139 4.139 5 C -0.219 4.219 6 C -0.132 4.132 7 C -0.092 4.092 8 O -0.301 6.301 9 C 0.075 3.925 10 C -0.512 4.512 11 H 0.102 0.898 12 C -0.185 4.185 13 N -0.427 5.427 14 Si 0.804 3.196 15 H -0.187 1.187 16 H -0.190 1.190 17 H -0.179 1.179 18 C -0.050 4.050 19 O -0.080 6.080 20 H 0.089 0.911 21 H 0.126 0.874 22 H 0.121 0.879 23 H 0.189 0.811 24 H 0.147 0.853 25 H 0.150 0.850 26 H 0.228 0.772 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.740 2.586 2.710 6.042 hybrid contribution 0.196 -0.568 0.413 0.729 sum -4.545 2.017 3.123 5.871 Atomic orbital electron populations 1.20466 0.82360 1.04213 1.05151 1.23289 0.95971 0.84502 1.01413 1.22342 0.90094 0.99681 1.14297 1.20263 0.95233 0.93032 1.05399 1.19945 0.89482 0.98815 1.13632 1.21021 0.98379 0.92526 1.01258 1.18165 0.84094 0.89167 1.17771 1.84728 1.37113 1.75177 1.33118 1.17252 0.87891 0.94220 0.93178 1.19534 1.08772 0.91533 1.31411 0.89834 1.26788 0.93909 1.05367 0.92411 1.69823 1.15460 1.40835 1.16576 0.85166 0.79569 0.75818 0.79008 1.18724 1.18979 1.17865 1.19754 0.82832 0.92830 1.09563 1.83919 1.15728 1.33931 1.74460 0.91115 0.87368 0.87936 0.81062 0.85329 0.84958 0.77216 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 10.39 71.23 0.74 -1.08 15 2 C 0.00 -0.09 7.24 24.74 0.18 0.09 15 3 C -0.25 -10.23 11.02 23.57 0.26 -9.97 15 4 C -0.14 -6.91 6.39 -20.21 -0.13 -7.04 15 5 C -0.20 -9.13 10.09 22.62 0.23 -8.90 15 6 C -0.11 -5.23 9.94 22.30 0.22 -5.00 15 7 C -0.05 -2.39 6.73 23.11 0.16 -2.24 15 8 O -0.49 -23.12 12.83 -89.46 -1.15 -24.27 15 9 C 0.08 4.46 5.48 -21.15 -0.12 4.35 15 10 C -0.48 -27.42 8.58 23.32 0.20 -27.22 15 11 H 0.08 4.54 7.79 -2.91 -0.02 4.52 15 12 C 0.03 1.72 4.92 85.23 0.42 2.14 15 13 N -0.80 -44.32 10.88 21.82 0.24 -44.09 15 14 Si 0.98 39.96 29.60 68.60 2.03 41.99 15 15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 16 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 18 C 0.00 -0.09 6.24 23.43 0.15 0.06 15 19 O -0.18 -9.53 8.36 -6.05 -0.05 -9.58 15 20 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.11 2.31 8.14 -2.39 -0.02 2.30 15 22 H 0.10 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.17 5.64 8.06 -2.91 -0.02 5.61 15 24 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 25 H 0.13 5.12 8.06 -2.91 -0.02 5.10 15 26 H 0.37 13.50 9.06 -74.06 -0.67 12.83 15 27 H 0.29 14.48 8.30 -92.71 -0.77 13.71 15 Total: -1.00 -69.76 243.76 3.90 -65.85 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.53 Total: 24.91 kcal Atomic # 6 Polarization: -57.13 SS G_CDS: 2.30 Total: -54.82 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.24 Total: -44.09 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.20 Total: -33.85 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -69.76 3.90 -65.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.944 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds