Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46436 * 111.00045 * 2 1 4 4 C 1.53386 * 108.65296 * 287.86133 * 3 2 1 5 5 H 1.08997 * 109.76610 * 51.43495 * 4 3 2 6 6 C 1.50695 * 109.76486 * 172.16432 * 4 3 2 7 7 H 1.08002 * 120.00205 * 4.59276 * 6 4 3 8 8 C 1.37877 * 119.99792 * 184.59566 * 6 4 3 9 9 N 1.31520 * 120.00231 * 185.15378 * 8 6 4 10 10 Si 1.86799 * 120.00017 * 5.15270 * 8 6 4 11 11 H 1.48504 * 109.46985 * 269.99867 * 10 8 6 12 12 H 1.48493 * 109.47310 * 30.00241 * 10 8 6 13 13 H 1.48499 * 109.47215 * 150.00029 * 10 8 6 14 14 C 1.53040 * 107.97643 * 291.80022 * 4 3 2 15 15 C 1.50822 * 109.64947 * 47.23042 * 14 4 3 16 16 C 1.38614 * 118.11132 * 164.72230 * 15 14 4 17 17 C 1.38055 * 120.48878 * 179.41583 * 16 15 14 18 18 C 1.38314 * 119.88978 * 359.97438 * 17 16 15 19 19 C 1.37813 * 119.95133 * 0.14008 * 18 17 16 20 20 C 1.38378 * 122.02564 * 344.38382 * 15 14 4 21 21 H 1.08993 * 109.47326 * 60.00134 * 1 2 3 22 22 H 1.08997 * 109.47083 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47493 * 299.99754 * 1 2 3 24 24 H 1.08997 * 109.60732 * 168.10946 * 3 2 1 25 25 H 1.09001 * 109.74291 * 47.69064 * 3 2 1 26 26 H 0.96996 * 119.99520 * 354.99187 * 9 8 6 27 27 H 1.09000 * 109.43730 * 167.34191 * 14 4 3 28 28 H 1.09007 * 109.43636 * 287.21991 * 14 4 3 29 29 H 1.07996 * 119.75730 * 359.38834 * 16 15 14 30 30 H 1.07993 * 120.05718 * 180.02562 * 17 16 15 31 31 H 1.08000 * 120.02819 * 180.11959 * 18 17 16 32 32 H 1.07998 * 119.78902 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9937 1.3671 0.0000 4 6 1.7534 1.9848 -1.3832 5 1 0.7073 1.8637 -1.6643 6 6 2.1075 3.4493 -1.3558 7 1 2.5386 3.8841 -0.4661 8 6 1.8810 4.2342 -2.4665 9 7 2.2820 5.4867 -2.4796 10 14 1.0045 3.5187 -3.9528 11 1 2.0035 2.9294 -4.8803 12 1 0.0582 2.4638 -3.5091 13 1 0.2551 4.5941 -4.6508 14 6 2.6473 1.2549 -2.3883 15 6 2.5238 -0.2350 -2.1884 16 6 2.9927 -1.0696 -3.1908 17 6 2.9151 -2.4411 -3.0538 18 6 2.3664 -2.9894 -1.9087 19 6 1.8959 -2.1660 -0.9088 20 6 1.9686 -0.7781 -1.0432 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.0628 1.3485 0.2116 25 1 1.4810 1.9583 0.7587 26 1 2.6714 5.8795 -1.6828 27 1 2.3394 1.5126 -3.4017 28 1 3.6841 1.5559 -2.2372 29 1 3.4216 -0.6438 -4.0859 30 1 3.2830 -3.0848 -3.8390 31 1 2.3063 -4.0621 -1.7983 32 1 1.4676 -2.5969 -0.0159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = 23.541044 kcal Electronic energy + Delta-G solvation = -14699.148131 eV Core-core repulsion = 12430.990228 eV Total energy + Delta-G solvation = -2268.157903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.04192 -36.58241 -34.04342 -32.07680 -29.91045 -29.50347 -26.56419 -24.73569 -23.50313 -21.52598 -21.15312 -18.62073 -17.69362 -16.45262 -15.31247 -15.12780 -14.41564 -13.89188 -13.67635 -13.60208 -13.08572 -12.66458 -12.28468 -12.22364 -11.80000 -11.49856 -11.28271 -11.15112 -10.93362 -10.45886 -10.18832 -10.05098 -9.69073 -8.82497 -8.71795 -8.48839 -8.25002 -7.43205 -6.46177 -4.15491 1.72635 1.76239 3.31904 3.38817 3.53352 4.07221 4.40933 4.42744 5.18759 5.25071 5.30952 5.42400 5.52663 5.71480 5.80380 5.83183 5.95962 6.03134 6.11938 6.18420 6.33034 6.48821 6.50425 6.60344 6.74581 6.83870 6.94837 7.04081 7.18483 7.33831 7.47699 7.86665 8.07076 8.31328 8.82737 9.55100 10.91468 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.010954 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.148770 B = 2555.511867 C = 2981.498316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.511 5.511 3 C 0.070 3.930 4 C -0.015 4.015 5 H 0.033 0.967 6 C -0.588 4.588 7 H 0.059 0.941 8 C 0.029 3.971 9 N -0.912 5.912 10 Si 1.052 2.948 11 H -0.283 1.283 12 H -0.281 1.281 13 H -0.288 1.288 14 C -0.085 4.085 15 C -0.105 4.105 16 C -0.112 4.112 17 C -0.141 4.141 18 C -0.123 4.123 19 C -0.127 4.127 20 C 0.114 3.886 21 H 0.038 0.962 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.268 0.732 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -14.058 0.754 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.227 5.227 3 C -0.056 4.056 4 C -0.036 4.036 5 H 0.051 0.949 6 C -0.627 4.627 7 H 0.077 0.923 8 C -0.176 4.176 9 N -0.547 5.547 10 Si 0.882 3.118 11 H -0.210 1.210 12 H -0.207 1.207 13 H -0.215 1.215 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.131 4.131 17 C -0.160 4.160 18 C -0.141 4.141 19 C -0.147 4.147 20 C 0.017 3.983 21 H 0.057 0.943 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.167 -13.871 -0.301 14.042 hybrid contribution 0.422 0.030 0.843 0.943 sum -1.746 -13.841 0.542 13.961 Atomic orbital electron populations 1.22398 0.85974 1.01466 1.01602 1.58881 1.07845 1.15202 1.40810 1.22216 0.99789 0.84582 0.99005 1.19730 0.95310 0.96610 0.91911 0.94939 1.21943 1.45902 0.92234 1.02572 0.92314 1.25755 0.95370 0.95179 1.01256 1.70807 1.38733 1.14012 1.31140 0.83864 0.77000 0.75182 0.75762 1.20983 1.20670 1.21502 1.21124 1.02292 0.88001 1.00816 1.20540 0.99932 0.97598 0.92682 1.21072 0.99920 0.93322 0.98757 1.20947 1.01978 0.94893 0.98186 1.20833 1.00058 0.98985 0.94248 1.20982 1.02508 0.91965 0.99204 1.18611 0.98358 0.92302 0.89017 0.94335 0.91900 0.91160 0.91296 0.90740 0.92212 0.92118 0.90524 0.86501 0.86724 0.86608 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.28 60.06 0.56 1.07 16 2 N -0.51 -9.49 4.74 -179.13 -0.85 -10.34 16 3 C 0.07 1.47 5.07 -3.88 -0.02 1.45 16 4 C -0.02 -0.36 1.70 -91.55 -0.16 -0.52 16 5 H 0.03 0.80 4.96 -51.93 -0.26 0.54 16 6 C -0.59 -16.21 8.89 -34.44 -0.31 -16.52 16 7 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 8 C 0.03 0.83 5.44 -17.82 -0.10 0.73 16 9 N -0.91 -27.88 13.70 55.43 0.76 -27.12 16 10 Si 1.05 25.58 25.31 -169.99 -4.30 21.28 16 11 H -0.28 -6.54 6.89 56.52 0.39 -6.15 16 12 H -0.28 -6.47 6.36 56.52 0.36 -6.11 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 C -0.09 -1.88 4.65 -27.80 -0.13 -2.01 16 15 C -0.10 -2.05 5.74 -104.37 -0.60 -2.64 16 16 C -0.11 -1.90 9.63 -39.51 -0.38 -2.28 16 17 C -0.14 -2.05 10.05 -39.62 -0.40 -2.45 16 18 C -0.12 -1.72 10.04 -39.71 -0.40 -2.12 16 19 C -0.13 -1.99 9.27 -39.22 -0.36 -2.36 16 20 C 0.11 2.11 5.12 -83.85 -0.43 1.68 16 21 H 0.04 0.68 6.50 -51.93 -0.34 0.35 16 22 H 0.06 0.88 7.65 -51.93 -0.40 0.48 16 23 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 24 H 0.07 1.47 8.11 -51.93 -0.42 1.04 16 25 H 0.07 1.52 8.02 -51.93 -0.42 1.10 16 26 H 0.27 8.13 8.72 -40.82 -0.36 7.77 16 27 H 0.06 1.36 4.75 -51.93 -0.25 1.11 16 28 H 0.08 1.73 8.08 -51.92 -0.42 1.31 16 29 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 254.09 15.07 3.83 3.83 Total: -1.00 -29.63 254.09 -7.52 -37.15 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.23 Total: 1.17 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.72 Total: -25.96 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.09 Total: -37.46 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.30 Total: 21.28 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.63 -7.52 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.690 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds