Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46436 * 111.00045 * 2 1 4 4 C 1.53386 * 108.65296 * 287.86133 * 3 2 1 5 5 H 1.08997 * 109.76610 * 51.43495 * 4 3 2 6 6 C 1.50695 * 109.76486 * 172.16432 * 4 3 2 7 7 H 1.08002 * 120.00205 * 4.59276 * 6 4 3 8 8 C 1.37877 * 119.99792 * 184.59566 * 6 4 3 9 9 N 1.31520 * 120.00231 * 185.15378 * 8 6 4 10 10 Si 1.86799 * 120.00017 * 5.15270 * 8 6 4 11 11 H 1.48504 * 109.46985 * 269.99867 * 10 8 6 12 12 H 1.48493 * 109.47310 * 30.00241 * 10 8 6 13 13 H 1.48499 * 109.47215 * 150.00029 * 10 8 6 14 14 C 1.53040 * 107.97643 * 291.80022 * 4 3 2 15 15 C 1.50822 * 109.64947 * 47.23042 * 14 4 3 16 16 C 1.38614 * 118.11132 * 164.72230 * 15 14 4 17 17 C 1.38055 * 120.48878 * 179.41583 * 16 15 14 18 18 C 1.38314 * 119.88978 * 359.97438 * 17 16 15 19 19 C 1.37813 * 119.95133 * 0.14008 * 18 17 16 20 20 C 1.38378 * 122.02564 * 344.38382 * 15 14 4 21 21 H 1.08993 * 109.47326 * 60.00134 * 1 2 3 22 22 H 1.08997 * 109.47083 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47493 * 299.99754 * 1 2 3 24 24 H 1.08997 * 109.60732 * 168.10946 * 3 2 1 25 25 H 1.09001 * 109.74291 * 47.69064 * 3 2 1 26 26 H 0.96996 * 119.99520 * 354.99187 * 9 8 6 27 27 H 1.09000 * 109.43730 * 167.34191 * 14 4 3 28 28 H 1.09007 * 109.43636 * 287.21991 * 14 4 3 29 29 H 1.07996 * 119.75730 * 359.38834 * 16 15 14 30 30 H 1.07993 * 120.05718 * 180.02562 * 17 16 15 31 31 H 1.08000 * 120.02819 * 180.11959 * 18 17 16 32 32 H 1.07998 * 119.78902 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9937 1.3671 0.0000 4 6 1.7534 1.9848 -1.3832 5 1 0.7073 1.8637 -1.6643 6 6 2.1075 3.4493 -1.3558 7 1 2.5386 3.8841 -0.4661 8 6 1.8810 4.2342 -2.4665 9 7 2.2820 5.4867 -2.4796 10 14 1.0045 3.5187 -3.9528 11 1 2.0035 2.9294 -4.8803 12 1 0.0582 2.4638 -3.5091 13 1 0.2551 4.5941 -4.6508 14 6 2.6473 1.2549 -2.3883 15 6 2.5238 -0.2350 -2.1884 16 6 2.9927 -1.0696 -3.1908 17 6 2.9151 -2.4411 -3.0538 18 6 2.3664 -2.9894 -1.9087 19 6 1.8959 -2.1660 -0.9088 20 6 1.9686 -0.7781 -1.0432 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.0628 1.3485 0.2116 25 1 1.4810 1.9583 0.7587 26 1 2.6714 5.8795 -1.6828 27 1 2.3394 1.5126 -3.4017 28 1 3.6841 1.5559 -2.2372 29 1 3.4216 -0.6438 -4.0859 30 1 3.2830 -3.0848 -3.8390 31 1 2.3063 -4.0621 -1.7983 32 1 1.4676 -2.5969 -0.0159 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = 4.876565 kcal Electronic energy + Delta-G solvation = -14699.957484 eV Core-core repulsion = 12430.990228 eV Total energy + Delta-G solvation = -2268.967256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45446 -37.96194 -35.84356 -33.96659 -31.45378 -30.80243 -28.04045 -26.59083 -24.96929 -22.95595 -22.70578 -20.24630 -19.81031 -17.78563 -16.74429 -16.48714 -16.20952 -15.33459 -15.30613 -14.98356 -14.69067 -14.23434 -14.05186 -13.79695 -13.24574 -12.98940 -12.90491 -12.73148 -12.32549 -12.04990 -11.98614 -11.71258 -11.52278 -10.81848 -10.70586 -10.20375 -9.56471 -8.92910 -8.65376 -6.45938 0.48747 0.51594 1.34774 1.43620 1.61191 2.38682 2.82084 3.00509 3.02086 3.96615 4.02415 4.08582 4.11773 4.32735 4.43166 4.47796 4.58727 4.64388 4.67943 4.76366 4.85844 4.90905 4.99271 5.13763 5.22515 5.46260 5.49380 5.56898 5.66329 5.84891 5.97466 5.98779 6.17172 6.49582 6.50834 7.32633 8.60378 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034596 B = 0.010954 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.148770 B = 2555.511867 C = 2981.498316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.507 5.507 3 C 0.080 3.920 4 C -0.014 4.014 5 H 0.028 0.972 6 C -0.588 4.588 7 H 0.025 0.975 8 C -0.021 4.021 9 N -0.944 5.944 10 Si 1.088 2.912 11 H -0.263 1.263 12 H -0.261 1.261 13 H -0.287 1.287 14 C -0.078 4.078 15 C -0.137 4.137 16 C -0.122 4.122 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.126 4.126 20 C 0.089 3.911 21 H 0.019 0.981 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.254 0.746 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.124 0.876 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -17.909 0.010 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.223 5.223 3 C -0.047 4.047 4 C -0.034 4.034 5 H 0.046 0.954 6 C -0.627 4.627 7 H 0.043 0.957 8 C -0.218 4.218 9 N -0.581 5.581 10 Si 0.911 3.089 11 H -0.189 1.189 12 H -0.186 1.186 13 H -0.214 1.214 14 C -0.115 4.115 15 C -0.140 4.140 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.008 4.008 21 H 0.037 0.963 22 H 0.109 0.891 23 H 0.100 0.900 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.175 0.825 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.879 -17.747 -1.026 18.008 hybrid contribution 0.689 1.144 1.151 1.762 sum -2.190 -16.603 0.124 16.748 Atomic orbital electron populations 1.22510 0.84596 1.03213 1.01231 1.58950 1.09062 1.13092 1.41237 1.21958 0.99232 0.86357 0.97203 1.19628 0.95215 0.94199 0.94387 0.95379 1.22177 1.44552 0.94817 1.01117 0.95705 1.27090 0.95552 0.94842 1.04335 1.70925 1.41063 1.15382 1.30718 0.83419 0.76923 0.75202 0.73312 1.18859 1.18629 1.21378 1.20840 1.00452 0.90590 0.99646 1.20381 1.03016 0.95879 0.94691 1.21244 0.99960 0.94539 0.98346 1.21359 1.00513 0.94003 0.99216 1.21328 0.97567 1.00882 0.92944 1.21235 1.02261 0.90582 1.00522 1.18881 0.99376 0.93682 0.88819 0.96267 0.89066 0.89986 0.92545 0.91038 0.93739 0.92729 0.92580 0.85828 0.83208 0.82548 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.28 127.69 1.19 2.10 16 2 N -0.51 -18.20 4.74 -720.63 -3.42 -21.62 16 3 C 0.08 3.39 5.07 86.52 0.44 3.83 16 4 C -0.01 -0.67 1.70 -11.40 -0.02 -0.69 16 5 H 0.03 1.38 4.96 -2.39 -0.01 1.37 16 6 C -0.59 -33.81 8.89 25.60 0.23 -33.58 16 7 H 0.02 1.55 7.99 -2.91 -0.02 1.52 16 8 C -0.02 -1.21 5.44 84.65 0.46 -0.75 16 9 N -0.94 -59.92 13.70 21.45 0.29 -59.62 16 10 Si 1.09 51.87 25.31 68.60 1.74 53.61 16 11 H -0.26 -11.63 6.89 99.48 0.69 -10.94 16 12 H -0.26 -11.54 6.36 99.48 0.63 -10.91 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 C -0.08 -3.46 4.65 29.90 0.14 -3.32 16 15 C -0.14 -5.17 5.74 -19.70 -0.11 -5.28 16 16 C -0.12 -3.81 9.63 22.32 0.21 -3.60 16 17 C -0.13 -3.21 10.05 22.24 0.22 -2.98 16 18 C -0.11 -2.46 10.04 22.19 0.22 -2.24 16 19 C -0.13 -3.45 9.27 22.50 0.21 -3.24 16 20 C 0.09 3.10 5.12 38.31 0.20 3.29 16 21 H 0.02 0.65 6.50 -2.39 -0.02 0.64 16 22 H 0.09 2.26 7.65 -2.39 -0.02 2.24 16 23 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 24 H 0.06 2.48 8.11 -2.39 -0.02 2.46 16 25 H 0.07 3.00 8.02 -2.39 -0.02 2.98 16 26 H 0.25 16.25 8.72 -92.71 -0.81 15.45 16 27 H 0.05 2.43 4.75 -2.39 -0.01 2.42 16 28 H 0.06 2.63 8.08 -2.38 -0.02 2.61 16 29 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -66.25 254.09 2.96 -63.29 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.97 Total: 10.82 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 3.38 Total: -46.48 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -3.12 Total: -81.24 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.74 Total: 53.61 kcal Total: -66.25 2.96 -63.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.170 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds