Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46429 * 110.99961 * 2 1 4 4 C 1.53385 * 108.66519 * 72.18937 * 3 2 1 5 5 H 1.09002 * 109.76685 * 308.62097 * 4 3 2 6 6 C 1.50696 * 109.76920 * 187.84027 * 4 3 2 7 7 H 1.07999 * 119.99984 * 0.02562 * 6 4 3 8 8 C 1.37881 * 120.00091 * 179.97438 * 6 4 3 9 9 N 1.31517 * 119.99437 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 119.99909 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46774 * 90.00414 * 10 8 6 12 12 H 1.48508 * 109.46855 * 210.00138 * 10 8 6 13 13 H 1.48493 * 109.47195 * 330.00425 * 10 8 6 14 14 C 1.53045 * 107.93379 * 68.22628 * 4 3 2 15 15 C 1.50801 * 109.65642 * 312.70191 * 14 4 3 16 16 C 1.38617 * 118.11598 * 195.48037 * 15 14 4 17 17 C 1.38061 * 120.48404 * 180.38435 * 16 15 14 18 18 C 1.38306 * 119.88796 * 359.97438 * 17 16 15 19 19 C 1.37815 * 119.95308 * 359.86648 * 18 17 16 20 20 C 1.38366 * 122.01885 * 15.65004 * 15 14 4 21 21 H 1.09002 * 109.47675 * 297.22659 * 1 2 3 22 22 H 1.09007 * 109.46822 * 57.22381 * 1 2 3 23 23 H 1.09004 * 109.47458 * 177.22277 * 1 2 3 24 24 H 1.09000 * 109.60290 * 191.93636 * 3 2 1 25 25 H 1.08991 * 109.60551 * 312.27329 * 3 2 1 26 26 H 0.97005 * 119.98914 * 179.97438 * 9 8 6 27 27 H 1.09006 * 109.43334 * 72.75054 * 14 4 3 28 28 H 1.08996 * 109.44101 * 192.63409 * 14 4 3 29 29 H 1.08000 * 119.76220 * 0.44176 * 16 15 14 30 30 H 1.07998 * 120.05429 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.02289 * 180.14723 * 18 17 16 32 32 H 1.07998 * 119.78646 * 180.10175 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 1.7547 1.9846 1.3835 5 1 0.7090 1.8626 1.6660 6 6 2.1087 3.4491 1.3560 7 1 2.4690 3.9006 0.4435 8 6 1.9715 4.2131 2.4957 9 7 1.5323 3.6634 3.6068 10 14 2.4110 6.0283 2.4617 11 1 1.2127 6.8207 2.0859 12 1 2.8810 6.4490 3.8062 13 1 3.4887 6.2582 1.4663 14 6 2.6504 1.2542 2.3868 15 6 2.5257 -0.2354 2.1874 16 6 2.9925 -1.0700 3.1909 17 6 2.9100 -2.4416 3.0559 18 6 2.3576 -2.9896 1.9125 19 6 1.8884 -2.1660 0.9121 20 6 1.9685 -0.7783 1.0432 21 1 -0.3634 0.4702 0.9138 22 1 -0.3633 0.5564 -0.8641 23 1 -0.3634 -1.0265 -0.0498 24 1 3.0627 1.3484 -0.2124 25 1 1.4800 1.9560 -0.7597 26 1 1.4362 4.2008 4.4086 27 1 3.6868 1.5552 2.2338 28 1 2.3444 1.5115 3.4007 29 1 3.4231 -0.6444 4.0852 30 1 3.2762 -3.0854 3.8419 31 1 2.2897 -4.0621 1.8057 32 1 1.4560 -2.5967 0.0212 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272779.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = 6.791929 kcal Electronic energy + Delta-G solvation = -14604.610142 eV Core-core repulsion = 12335.725943 eV Total energy + Delta-G solvation = -2268.884199 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.31477 -37.85711 -35.72551 -33.55774 -31.27943 -30.68823 -27.80498 -26.97398 -24.81292 -23.21808 -22.70037 -20.15855 -18.58008 -17.69411 -16.65297 -16.38285 -16.33121 -15.29916 -15.15472 -14.92353 -14.46835 -14.20978 -13.74807 -13.58370 -13.10588 -12.85612 -12.79357 -12.61067 -12.39216 -12.27785 -11.94157 -11.83224 -11.52703 -10.86216 -10.56998 -10.06925 -9.48156 -8.71997 -8.14639 -6.29469 0.54282 0.58211 1.39324 1.40191 1.50654 2.39537 2.88106 3.10663 3.14015 4.09477 4.15650 4.20847 4.30675 4.43861 4.55762 4.58957 4.65615 4.78805 4.81802 4.93202 4.95979 5.03686 5.17033 5.23824 5.50008 5.57412 5.64098 5.72263 5.78191 5.90668 6.03945 6.11019 6.34373 6.57670 6.81632 7.39236 8.90803 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.009107 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.432842 B = 3073.777258 C = 3531.188922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.506 5.506 3 C 0.071 3.929 4 C 0.021 3.979 5 H 0.000 1.000 6 C -0.535 4.535 7 H 0.059 0.941 8 C 0.014 3.986 9 N -0.918 5.918 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.266 1.266 14 C -0.059 4.059 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.135 4.135 18 C -0.114 4.114 19 C -0.127 4.127 20 C 0.086 3.914 21 H 0.010 0.990 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.261 0.739 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -10.721 -3.413 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.222 5.222 3 C -0.057 4.057 4 C 0.001 3.999 5 H 0.018 0.982 6 C -0.573 4.573 7 H 0.077 0.923 8 C -0.185 4.185 9 N -0.557 5.557 10 Si 0.783 3.217 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.191 1.191 14 C -0.096 4.096 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.132 4.132 19 C -0.147 4.147 20 C -0.010 4.010 21 H 0.029 0.971 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.400 -10.861 -3.716 11.486 hybrid contribution 0.006 1.822 1.102 2.130 sum 0.406 -9.038 -2.614 9.418 Atomic orbital electron populations 1.22446 0.85005 1.02962 1.00723 1.59002 1.08718 1.13510 1.40930 1.22160 0.99277 0.86329 0.97903 1.19132 0.94088 0.94346 0.92294 0.98191 1.21433 1.44457 0.94723 0.96715 0.92314 1.25790 0.94777 1.02793 0.95171 1.70064 1.46918 1.37352 1.01390 0.85562 0.78698 0.80055 0.77405 1.20015 1.20986 1.19073 1.20416 0.98542 0.88784 1.01896 1.20631 1.01792 0.96904 0.94185 1.21201 1.00450 0.94583 0.98248 1.21328 1.00815 0.93891 0.99268 1.21289 0.98059 1.00815 0.93030 1.21239 1.02277 0.90687 1.00497 1.18881 0.99491 0.93654 0.89002 0.97094 0.89824 0.89395 0.92248 0.90610 0.92993 0.94352 0.91960 0.86760 0.83466 0.82528 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 9.22 127.69 1.18 2.33 16 2 N -0.51 -19.47 4.75 -720.63 -3.42 -22.89 16 3 C 0.07 3.08 5.06 86.52 0.44 3.52 16 4 C 0.02 1.09 2.13 -11.40 -0.02 1.06 16 5 H 0.00 0.00 6.48 -2.39 -0.02 -0.01 16 6 C -0.53 -29.70 8.53 25.60 0.22 -29.48 16 7 H 0.06 3.17 7.75 -2.91 -0.02 3.14 16 8 C 0.01 0.77 5.32 84.66 0.45 1.22 16 9 N -0.92 -53.73 11.63 21.45 0.25 -53.49 16 10 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C -0.06 -2.96 4.73 29.90 0.14 -2.82 16 15 C -0.13 -5.69 5.74 -19.71 -0.11 -5.80 16 16 C -0.13 -4.63 9.63 22.32 0.21 -4.41 16 17 C -0.13 -3.85 10.05 22.24 0.22 -3.63 16 18 C -0.11 -2.98 10.03 22.19 0.22 -2.76 16 19 C -0.13 -3.92 9.29 22.50 0.21 -3.71 16 20 C 0.09 3.33 5.12 38.30 0.20 3.53 16 21 H 0.01 0.42 6.60 -2.39 -0.02 0.40 16 22 H 0.08 2.51 8.05 -2.38 -0.02 2.49 16 23 H 0.09 2.45 7.70 -2.38 -0.02 2.44 16 24 H 0.06 2.63 8.11 -2.39 -0.02 2.61 16 25 H 0.08 3.14 7.98 -2.39 -0.02 3.12 16 26 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 27 H 0.04 1.99 8.08 -2.38 -0.02 1.97 16 28 H 0.06 3.49 6.66 -2.39 -0.02 3.47 16 29 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -62.54 260.05 3.30 -59.24 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.09 Total: 12.34 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 3.35 Total: -40.96 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -3.17 Total: -76.37 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -62.54 3.30 -59.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272779.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.034 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds