Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33949 * 124.89097 * 2 1 4 4 C 1.46914 * 106.14826 * 180.02562 * 3 2 1 5 5 C 1.38946 * 134.19745 * 179.97438 * 4 3 2 6 6 C 1.40461 * 119.34721 * 180.02562 * 5 4 3 7 7 C 1.41348 * 120.11203 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00499 * 154.62616 * 7 6 5 9 9 C 1.39866 * 119.99687 * 334.62360 * 7 6 5 10 10 N 1.30897 * 119.99684 * 342.92823 * 9 7 6 11 11 Si 1.86799 * 120.00224 * 162.92493 * 9 7 6 12 12 H 1.48497 * 109.46952 * 90.00214 * 11 9 7 13 13 H 1.48500 * 109.47247 * 210.00058 * 11 9 7 14 14 H 1.48504 * 109.46965 * 329.99823 * 11 9 7 15 15 C 1.41020 * 119.78538 * 359.97438 * 6 5 4 16 16 C 1.36524 * 120.53418 * 359.97438 * 15 6 5 17 17 O 1.35942 * 119.83814 * 179.97438 * 16 15 6 18 18 C 1.39969 * 120.32624 * 0.02562 * 16 15 6 19 19 O 1.34414 * 124.88610 * 179.70171 * 2 1 3 20 20 H 1.08996 * 109.47398 * 89.99635 * 1 2 3 21 21 H 1.09000 * 109.46784 * 329.99923 * 1 2 3 22 22 H 1.08994 * 109.46928 * 209.99837 * 1 2 3 23 23 H 1.07997 * 126.92559 * 0.03558 * 3 2 1 24 24 H 1.08005 * 120.33161 * 0.02562 * 5 4 3 25 25 H 0.96999 * 119.99371 * 180.02562 * 10 9 7 26 26 H 1.08002 * 119.73766 * 180.02562 * 15 6 5 27 27 H 0.96701 * 113.99940 * 270.02471 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2733 1.0987 0.0000 4 6 3.6645 0.6266 -0.0006 5 6 4.9019 1.2587 -0.0014 6 6 6.0719 0.4816 -0.0024 7 6 7.3391 1.1077 -0.0026 8 1 8.1978 0.5892 0.3975 9 6 7.4809 2.3990 -0.5210 10 7 6.5520 2.8987 -1.2960 11 14 8.9960 3.4104 -0.1073 12 1 10.0524 3.1562 -1.1195 13 1 8.6441 4.8531 -0.1108 14 1 9.4957 3.0261 1.2373 15 6 5.9782 -0.9255 -0.0021 16 6 4.7589 -1.5395 -0.0003 17 8 4.6851 -2.8969 -0.0006 18 6 3.5843 -0.7783 0.0007 19 8 2.2758 -1.1026 0.0057 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 0.8900 0.5139 22 1 -0.3633 -0.8900 0.5138 23 1 1.9362 2.1247 0.0005 24 1 4.9635 2.3370 -0.0012 25 1 6.6506 3.7941 -1.6559 26 1 6.8784 -1.5223 -0.0025 27 1 4.6627 -3.2894 -0.8841 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274033.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -51.169943 kcal Electronic energy + Delta-G solvation = -14001.058701 eV Core-core repulsion = 11496.109329 eV Total energy + Delta-G solvation = -2504.949371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.95055 -39.43526 -37.56789 -35.04660 -33.70097 -31.97382 -30.20548 -27.93165 -26.92353 -23.29920 -22.31990 -21.65110 -19.75786 -18.65180 -17.70870 -17.26984 -16.87328 -16.32375 -15.83888 -15.22607 -14.81468 -14.00713 -13.86408 -13.71653 -13.62504 -13.45880 -12.86568 -12.80676 -12.52681 -12.31221 -12.02128 -11.77514 -11.46601 -10.99563 -10.57408 -9.26487 -8.76671 -8.63975 -6.38362 0.32837 0.77853 1.39545 1.45526 1.55250 1.64088 2.09258 2.20295 2.60825 3.31870 3.59949 3.80320 4.24827 4.42460 4.56652 4.74669 4.76526 4.80734 4.92427 5.04745 5.20822 5.29505 5.37392 5.69012 5.82574 5.90418 6.03265 6.33481 6.52233 6.77092 6.83846 7.01869 8.30195 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.037947 B = 0.008858 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.691160 B = 3160.351187 C = 3812.479413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.025 3.975 3 C -0.251 4.251 4 C -0.103 4.103 5 C -0.178 4.178 6 C 0.082 3.918 7 C -0.491 4.491 8 H 0.085 0.915 9 C 0.035 3.965 10 N -0.823 5.823 11 Si 0.987 3.013 12 H -0.260 1.260 13 H -0.267 1.267 14 H -0.258 1.258 15 C -0.212 4.212 16 C 0.134 3.866 17 O -0.505 6.505 18 C -0.108 4.108 19 O -0.211 6.211 20 H 0.100 0.900 21 H 0.110 0.890 22 H 0.087 0.913 23 H 0.164 0.836 24 H 0.110 0.890 25 H 0.290 0.710 26 H 0.128 0.872 27 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -1.219 0.046 6.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.023 4.023 3 C -0.270 4.270 4 C -0.104 4.104 5 C -0.198 4.198 6 C 0.080 3.920 7 C -0.519 4.519 8 H 0.103 0.897 9 C -0.180 4.180 10 N -0.449 5.449 11 Si 0.807 3.193 12 H -0.184 1.184 13 H -0.191 1.191 14 H -0.182 1.182 15 C -0.231 4.231 16 C 0.089 3.911 17 O -0.316 6.316 18 C -0.154 4.154 19 O -0.116 6.116 20 H 0.118 0.882 21 H 0.129 0.871 22 H 0.106 0.894 23 H 0.181 0.819 24 H 0.128 0.872 25 H 0.101 0.899 26 H 0.146 0.854 27 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.241 -1.240 0.507 6.383 hybrid contribution 0.826 0.529 -0.549 1.124 sum -5.415 -0.712 -0.042 5.462 Atomic orbital electron populations 1.20575 0.81205 1.05537 1.05065 1.23163 0.95776 0.83393 0.99959 1.22417 0.90271 1.00025 1.14309 1.20148 0.94991 0.92623 1.02655 1.20671 0.89479 0.99300 1.10315 1.17691 0.94057 0.90625 0.89658 1.19775 0.94889 1.00467 1.36819 0.89692 1.26811 1.01232 0.98343 0.91657 1.69914 1.35370 1.17188 1.22422 0.85135 0.77099 0.77082 0.80003 1.18408 1.19119 1.18153 1.21048 0.95100 0.95002 1.11953 1.16831 0.88158 0.81695 1.04421 1.84733 1.96211 1.16007 1.34679 1.19916 0.82695 0.94051 1.18758 1.83749 1.15020 1.34510 1.78274 0.88204 0.87131 0.89397 0.81881 0.87234 0.89943 0.85413 0.74500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.38 71.24 0.74 -0.77 15 2 C 0.02 0.93 7.23 24.71 0.18 1.11 15 3 C -0.25 -10.57 11.01 23.57 0.26 -10.31 15 4 C -0.10 -5.34 6.38 -20.23 -0.13 -5.47 15 5 C -0.18 -9.91 8.74 22.98 0.20 -9.71 15 6 C 0.08 4.56 5.57 -21.29 -0.12 4.45 15 7 C -0.49 -26.35 9.04 23.43 0.21 -26.13 15 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 15 9 C 0.03 1.74 5.14 85.23 0.44 2.18 15 10 N -0.82 -43.15 10.96 21.82 0.24 -42.91 15 11 Si 0.99 37.61 29.59 68.60 2.03 39.64 15 12 H -0.26 -9.43 7.11 99.48 0.71 -8.73 15 13 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 14 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 15 C -0.21 -10.75 9.62 22.55 0.22 -10.53 15 16 C 0.13 6.50 6.66 22.29 0.15 6.65 15 17 O -0.51 -20.71 13.49 -92.90 -1.25 -21.96 15 18 C -0.11 -5.46 7.37 23.30 0.17 -5.29 15 19 O -0.21 -9.49 10.57 -8.55 -0.09 -9.58 15 20 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.11 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.16 5.88 8.06 -2.91 -0.02 5.86 15 24 H 0.11 6.31 6.19 -2.91 -0.02 6.29 15 25 H 0.29 13.65 8.30 -92.71 -0.77 12.88 15 26 H 0.13 5.94 8.06 -2.91 -0.02 5.92 15 27 H 0.40 11.98 9.06 -74.06 -0.67 11.31 15 Total: -1.00 -67.13 245.08 3.78 -63.35 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.53 Total: 25.30 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 2.32 Total: -53.83 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.24 Total: -42.91 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.34 Total: -31.55 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -67.13 3.78 -63.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274033.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.184 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds