Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.33346 * 122.53021 * 279.70313 * 12 9 7 14 14 S 1.75883 * 109.61799 * 179.90723 * 13 12 9 15 15 C 1.75884 * 90.98062 * 0.30356 * 14 13 12 16 16 Cl 1.73602 * 125.20778 * 179.84890 * 15 14 13 17 17 C 1.33497 * 109.58084 * 359.83325 * 15 14 13 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 20 20 H 1.08003 * 125.19336 * 0.02562 * 13 12 9 21 21 H 1.08000 * 122.55750 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8786 -0.6821 -0.8838 11 8 3.9830 -0.5181 1.1732 12 6 4.0138 -2.6149 0.0107 13 6 4.0695 -3.3520 1.1206 14 16 4.7025 -4.9479 0.7385 15 6 4.8695 -4.5090 -0.9565 16 17 5.4763 -5.5514 -2.2051 17 6 4.4580 -3.2518 -1.1358 18 1 -0.4849 0.8400 0.0004 19 1 3.6942 -0.9200 2.0039 20 1 3.7698 -3.0203 2.1037 21 1 4.4700 -2.7684 -2.1015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274927.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -42.132090 kcal Electronic energy + Delta-G solvation = -10480.991090 eV Core-core repulsion = 8280.920556 eV Total energy + Delta-G solvation = -2200.070534 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.78220 -37.86342 -36.64760 -34.44144 -30.72206 -29.18905 -25.71180 -23.05473 -20.03815 -19.60639 -18.75554 -17.14034 -16.75720 -15.84642 -15.00042 -14.87334 -14.70857 -14.30282 -13.77412 -13.47069 -13.14639 -12.87039 -12.62375 -12.22949 -11.87351 -11.66241 -11.19916 -10.83399 -10.33544 -9.60263 -9.23451 -8.34468 -6.50316 -0.10656 0.17877 0.85863 1.27008 1.42549 1.48051 1.70188 1.77463 2.44280 3.02600 4.04042 4.18436 4.26916 4.52662 4.84529 4.98630 5.23975 5.43277 5.67939 6.10015 6.62313 7.12678 7.30905 8.79254 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.048885 B = 0.008444 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.637923 B = 3315.258591 C = 3442.097674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.031 3.969 3 Si 0.936 3.064 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.035 0.965 9 C 0.254 3.746 10 H 0.065 0.935 11 O -0.575 6.575 12 C -0.110 4.110 13 C -0.205 4.205 14 S 0.166 5.834 15 C -0.161 4.161 16 Cl -0.011 7.011 17 C -0.118 4.118 18 H 0.268 0.732 19 H 0.370 0.630 20 H 0.181 0.819 21 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 -8.187 0.596 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.169 4.169 3 Si 0.760 3.240 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.124 1.124 7 C -0.592 4.592 8 H 0.053 0.947 9 C 0.193 3.807 10 H 0.083 0.917 11 O -0.383 6.383 12 C -0.122 4.122 13 C -0.340 4.340 14 S 0.428 5.572 15 C -0.304 4.304 16 Cl 0.018 6.982 17 C -0.151 4.151 18 H 0.077 0.923 19 H 0.218 0.782 20 H 0.198 0.802 21 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.026 -9.151 0.892 15.138 hybrid contribution -0.960 1.502 -0.812 1.959 sum 11.067 -7.649 0.080 13.453 Atomic orbital electron populations 1.70072 1.08527 1.28506 1.50479 1.25856 0.95258 1.03518 0.92317 0.86027 0.82030 0.77378 0.78565 1.21017 1.22326 1.12444 1.21619 0.91256 0.93240 1.53075 0.94672 1.18271 0.90992 0.84961 0.86439 0.91744 1.86651 1.77630 1.57252 1.16750 1.19587 1.00166 0.99801 0.92649 1.25593 1.08222 0.96664 1.03525 1.83742 1.63156 1.12999 0.97319 1.25205 1.12827 0.96491 0.95861 1.98332 1.85856 1.64470 1.49587 1.20161 1.00693 0.93453 1.00750 0.92331 0.78161 0.80153 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.96 21.45 0.30 -56.77 14 2 C 0.03 1.72 5.47 84.66 0.46 2.19 14 3 Si 0.94 43.52 26.99 68.60 1.85 45.37 14 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 14 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 14 6 H -0.20 -8.88 5.30 99.48 0.53 -8.35 14 7 C -0.55 -30.19 9.33 25.60 0.24 -29.95 14 8 H 0.03 2.15 7.98 -2.91 -0.02 2.12 14 9 C 0.25 11.29 2.64 29.10 0.08 11.36 14 10 H 0.06 2.90 7.52 -2.38 -0.02 2.88 14 11 O -0.58 -23.88 10.00 -148.98 -1.49 -25.37 14 12 C -0.11 -4.23 4.82 -20.92 -0.10 -4.33 14 13 C -0.20 -6.73 10.44 66.71 0.70 -6.03 14 14 S 0.17 4.56 23.34 -56.49 -1.32 3.25 14 15 C -0.16 -4.92 7.10 66.75 0.47 -4.44 14 16 Cl -0.01 -0.28 29.29 -2.72 -0.08 -0.36 14 17 C -0.12 -4.11 9.90 21.25 0.21 -3.90 14 18 H 0.27 15.32 8.31 -92.71 -0.77 14.55 14 19 H 0.37 13.20 7.87 -74.06 -0.58 12.62 14 20 H 0.18 5.27 7.28 -2.91 -0.02 5.24 14 21 H 0.15 4.93 8.06 -2.91 -0.02 4.91 14 Total: -1.00 -62.27 219.80 1.82 -60.45 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.50 Total: 8.55 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 2.06 Total: -35.11 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.30 Total: -56.77 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.49 Total: -25.37 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.85 Total: 45.37 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.32 Total: 3.25 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -62.27 1.82 -60.45 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274927.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.318 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds