Wall clock time and date at job start Mon Mar 30 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.34003 * 124.93412 * 89.99977 * 10 9 7 12 12 C 1.46788 * 106.19373 * 180.02562 * 11 10 9 13 13 C 1.39532 * 134.32499 * 180.02562 * 12 11 10 14 14 C 1.36718 * 119.81638 * 180.02562 * 13 12 11 15 15 C 1.38718 * 120.46195 * 359.96507 * 14 13 12 16 16 C 1.38293 * 120.62076 * 0.02562 * 15 14 13 17 17 O 1.35957 * 120.13907 * 180.02562 * 16 15 14 18 18 C 1.39394 * 119.72180 * 0.02562 * 16 15 14 19 19 O 1.34417 * 124.93916 * 269.70329 * 10 9 7 20 20 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 22 22 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 23 23 H 1.08001 * 126.90561 * 359.97438 * 11 10 9 24 24 H 1.08002 * 120.09537 * 359.94959 * 13 12 11 25 25 H 1.07999 * 119.76811 * 179.97438 * 14 13 12 26 26 H 1.07998 * 119.68901 * 179.97438 * 15 14 13 27 27 H 0.96704 * 113.99556 * 269.97678 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7290 -4.2279 1.0980 12 6 3.6327 -5.2841 0.6264 13 6 4.4409 -6.2297 1.2585 14 6 5.1849 -7.0979 0.5089 15 6 5.1416 -7.0462 -0.8767 16 6 4.3469 -6.1167 -1.5224 17 8 4.3115 -6.0750 -2.8808 18 6 3.5823 -5.2227 -0.7745 19 8 2.7262 -4.2335 -1.1024 20 1 -0.4849 0.8400 0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.5105 -3.9718 2.1243 24 1 4.4797 -6.2749 2.3369 25 1 5.8105 -7.8293 0.9989 26 1 5.7347 -7.7378 -1.4565 27 1 4.9725 -5.4885 -3.2736 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281745.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:49 Heat of formation + Delta-G solvation = -25.877346 kcal Electronic energy + Delta-G solvation = -13734.026280 eV Core-core repulsion = 11230.173678 eV Total energy + Delta-G solvation = -2503.852602 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.90114 -38.46037 -36.29437 -33.62546 -31.86224 -30.34386 -29.17581 -27.07313 -23.68026 -22.47264 -21.36860 -20.33362 -18.01670 -17.02824 -16.64210 -15.78147 -15.44674 -15.18793 -14.60598 -14.20659 -13.55844 -12.70892 -12.45815 -12.20969 -12.04852 -11.77969 -11.48385 -11.20738 -10.88657 -10.78453 -10.49112 -10.00488 -9.76355 -9.33520 -8.56965 -8.21200 -7.51848 -6.19014 -4.25048 1.17823 1.61424 3.01072 3.26115 3.29195 3.30236 3.35450 3.86540 4.31036 4.34083 4.96345 5.08467 5.16587 5.30859 5.48459 5.60105 5.97847 6.03064 6.22566 6.43718 6.53988 6.70411 6.82631 6.94993 7.18112 7.29011 7.66824 7.74781 7.97796 8.04838 8.77065 9.39513 10.90598 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.006868 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.146433 B = 4075.842304 C = 4236.420130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.080 3.920 10 C 0.107 3.893 11 C -0.257 4.257 12 C -0.099 4.099 13 C -0.091 4.091 14 C -0.126 4.126 15 C -0.141 4.141 16 C 0.120 3.880 17 O -0.493 6.493 18 C 0.010 3.990 19 O -0.185 6.185 20 H 0.267 0.733 21 H 0.043 0.957 22 H 0.059 0.941 23 H 0.154 0.846 24 H 0.125 0.875 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -10.478 0.302 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.043 3.957 10 C 0.059 3.941 11 C -0.276 4.276 12 C -0.100 4.100 13 C -0.109 4.109 14 C -0.145 4.145 15 C -0.159 4.159 16 C 0.075 3.925 17 O -0.303 6.303 18 C -0.038 4.038 19 O -0.085 6.085 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.172 0.828 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 8.220 -10.683 0.085 13.480 hybrid contribution 0.858 1.223 0.070 1.495 sum 9.078 -9.461 0.156 13.112 Atomic orbital electron populations 1.69929 1.06064 1.27483 1.49409 1.24979 0.94972 0.99435 0.94618 0.86461 0.79468 0.82123 0.78886 1.20003 1.21011 1.19966 1.20908 0.93235 0.89267 1.52674 0.92133 1.18233 0.90924 0.86393 1.00133 1.23878 0.94726 0.93181 0.82328 1.22101 1.05115 1.00497 0.99842 1.20010 0.99539 0.98157 0.92320 1.20261 0.96186 0.94565 0.99867 1.20515 1.00837 1.00097 0.93025 1.20946 1.00246 0.99879 0.94873 1.17301 0.97675 0.95288 0.82238 1.84854 1.60580 1.69001 1.15851 1.20172 0.97053 0.92739 0.93869 1.84121 1.48994 1.40097 1.35329 0.92382 0.93885 0.92279 0.82791 0.85712 0.85513 0.84870 0.75703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.82 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.52 -14.48 9.09 -34.44 -0.31 -14.79 15 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 15 9 C 0.08 2.04 5.48 -29.03 -0.16 1.89 15 10 C 0.11 2.48 6.42 -35.79 -0.23 2.25 15 11 C -0.26 -5.29 11.01 -37.62 -0.41 -5.70 15 12 C -0.10 -1.88 6.40 -105.18 -0.67 -2.55 15 13 C -0.09 -1.36 10.05 -39.65 -0.40 -1.76 15 14 C -0.13 -1.64 9.98 -39.95 -0.40 -2.03 15 15 C -0.14 -1.92 9.95 -39.38 -0.39 -2.31 15 16 C 0.12 2.00 6.72 -39.13 -0.26 1.74 15 17 O -0.49 -7.51 13.51 -19.60 -0.26 -7.78 15 18 C 0.01 0.20 7.36 -38.37 -0.28 -0.08 15 19 O -0.18 -4.24 10.58 3.83 0.04 -4.20 15 20 H 0.27 7.20 8.31 -40.82 -0.34 6.87 15 21 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.06 1.52 8.14 -51.93 -0.42 1.09 15 23 H 0.15 2.87 8.06 -52.49 -0.42 2.45 15 24 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 26 H 0.13 1.42 8.06 -52.49 -0.42 0.99 15 27 H 0.39 4.02 9.06 45.56 0.41 4.43 15 LS Contribution 249.78 15.07 3.76 3.76 Total: -1.00 -30.88 249.78 -6.03 -36.91 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -1.66 Total: 1.77 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -3.62 Total: -21.73 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.74 Total: -24.82 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.22 Total: -11.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.88 -6.03 -36.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281745.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.037 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds