Wall clock time and date at job start Mon Mar 30 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.34003 * 124.93412 * 89.99977 * 10 9 7 12 12 C 1.46788 * 106.19373 * 180.02562 * 11 10 9 13 13 C 1.39532 * 134.32499 * 180.02562 * 12 11 10 14 14 C 1.36718 * 119.81638 * 180.02562 * 13 12 11 15 15 C 1.38718 * 120.46195 * 359.96507 * 14 13 12 16 16 C 1.38293 * 120.62076 * 0.02562 * 15 14 13 17 17 O 1.35957 * 120.13907 * 180.02562 * 16 15 14 18 18 C 1.39394 * 119.72180 * 0.02562 * 16 15 14 19 19 O 1.34417 * 124.93916 * 269.70329 * 10 9 7 20 20 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 22 22 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 23 23 H 1.08001 * 126.90561 * 359.97438 * 11 10 9 24 24 H 1.08002 * 120.09537 * 359.94959 * 13 12 11 25 25 H 1.07999 * 119.76811 * 179.97438 * 14 13 12 26 26 H 1.07998 * 119.68901 * 179.97438 * 15 14 13 27 27 H 0.96704 * 113.99556 * 269.97678 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7290 -4.2279 1.0980 12 6 3.6327 -5.2841 0.6264 13 6 4.4409 -6.2297 1.2585 14 6 5.1849 -7.0979 0.5089 15 6 5.1416 -7.0462 -0.8767 16 6 4.3469 -6.1167 -1.5224 17 8 4.3115 -6.0750 -2.8808 18 6 3.5823 -5.2227 -0.7745 19 8 2.7262 -4.2335 -1.1024 20 1 -0.4849 0.8400 0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.5105 -3.9718 2.1243 24 1 4.4797 -6.2749 2.3369 25 1 5.8105 -7.8293 0.9989 26 1 5.7347 -7.7378 -1.4565 27 1 4.9725 -5.4885 -3.2736 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281745.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:48 Heat of formation + Delta-G solvation = -46.839574 kcal Electronic energy + Delta-G solvation = -13734.935271 eV Core-core repulsion = 11230.173678 eV Total energy + Delta-G solvation = -2504.761593 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.39561 -39.70236 -37.49560 -35.65573 -33.52859 -31.96450 -30.42925 -28.77708 -25.57444 -23.81233 -22.72267 -21.92426 -19.29004 -18.72295 -18.39497 -17.28048 -16.98592 -16.52633 -16.29354 -15.48747 -14.99476 -14.40360 -14.11710 -14.09774 -13.44398 -13.23605 -13.02137 -12.73741 -12.60106 -12.37674 -11.94528 -11.77841 -11.76635 -10.81307 -10.69133 -9.53876 -8.97568 -8.29188 -6.45448 -0.08401 0.35176 1.36402 1.42054 1.44860 1.52204 1.82287 2.37262 2.65603 3.02171 3.14909 3.57950 3.91733 4.09730 4.32834 4.37302 4.57659 4.69684 4.80871 5.08101 5.08817 5.25337 5.29220 5.44058 5.51934 5.59611 5.81260 5.96317 6.24007 6.61901 6.75328 7.23575 8.79586 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.006868 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.146433 B = 4075.842304 C = 4236.420130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.089 3.911 10 C 0.062 3.938 11 C -0.242 4.242 12 C -0.123 4.123 13 C -0.090 4.090 14 C -0.109 4.109 15 C -0.118 4.118 16 C 0.102 3.898 17 O -0.504 6.504 18 C -0.026 4.026 19 O -0.214 6.214 20 H 0.271 0.729 21 H 0.014 0.986 22 H 0.048 0.952 23 H 0.167 0.833 24 H 0.154 0.846 25 H 0.177 0.823 26 H 0.173 0.827 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.682 -12.048 1.066 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.052 3.948 10 C 0.014 3.986 11 C -0.261 4.261 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.127 4.127 15 C -0.136 4.136 16 C 0.056 3.944 17 O -0.316 6.316 18 C -0.073 4.073 19 O -0.117 6.117 20 H 0.080 0.920 21 H 0.032 0.968 22 H 0.066 0.934 23 H 0.185 0.815 24 H 0.171 0.829 25 H 0.195 0.805 26 H 0.191 0.809 27 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 10.998 -12.263 0.848 16.494 hybrid contribution 0.113 1.498 -0.192 1.515 sum 11.111 -10.764 0.656 15.484 Atomic orbital electron populations 1.70041 1.07608 1.28655 1.49935 1.25906 0.95872 1.03130 0.93814 0.85377 0.78276 0.77456 0.79233 1.19527 1.20010 1.18866 1.21194 0.93149 0.90671 1.53096 0.92724 1.17865 0.91190 0.87580 0.98124 1.23349 0.96989 0.94592 0.83646 1.22357 1.04068 1.00052 0.99581 1.20207 1.00884 0.99252 0.92052 1.20707 0.95020 0.93427 1.01664 1.21116 0.99486 0.99427 0.92642 1.21499 0.98205 0.98221 0.95703 1.17712 0.98167 0.95678 0.82796 1.84801 1.61866 1.69530 1.15444 1.20902 0.97778 0.93168 0.95467 1.84002 1.50467 1.41608 1.35583 0.92005 0.96798 0.93402 0.81519 0.82851 0.80541 0.80925 0.73543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 13.29 21.45 0.28 -54.38 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.97 43.77 29.54 68.60 2.03 45.79 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 7 C -0.54 -31.46 9.09 25.60 0.23 -31.23 15 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 15 9 C 0.09 4.91 5.48 29.10 0.16 5.07 15 10 C 0.06 3.04 6.42 24.72 0.16 3.20 15 11 C -0.24 -10.23 11.01 23.54 0.26 -9.97 15 12 C -0.12 -4.57 6.40 -20.22 -0.13 -4.70 15 13 C -0.09 -2.39 10.05 22.23 0.22 -2.17 15 14 C -0.11 -2.21 9.98 22.03 0.22 -1.99 15 15 C -0.12 -2.67 9.95 22.40 0.22 -2.45 15 16 C 0.10 3.22 6.72 22.56 0.15 3.38 15 17 O -0.50 -14.77 13.51 -93.06 -1.26 -16.03 15 18 C -0.03 -1.05 7.36 23.06 0.17 -0.88 15 19 O -0.21 -10.42 10.58 -9.21 -0.10 -10.52 15 20 H 0.27 14.95 8.31 -92.71 -0.77 14.18 15 21 H 0.01 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.05 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.17 6.32 8.06 -2.91 -0.02 6.29 15 24 H 0.15 3.13 8.06 -2.91 -0.02 3.11 15 25 H 0.18 1.95 8.06 -2.91 -0.02 1.93 15 26 H 0.17 2.58 8.06 -2.91 -0.02 2.55 15 27 H 0.41 7.97 9.06 -74.05 -0.67 7.29 15 Total: -1.00 -70.42 249.78 3.61 -66.81 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.52 Total: 8.91 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 2.13 Total: -40.59 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.28 Total: -54.38 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.35 Total: -26.55 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.42 3.61 -66.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281745.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.973 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds