Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33885 * 126.91440 * 2 1 4 4 O 1.34503 * 110.28326 * 179.97438 * 3 2 1 5 5 C 1.34826 * 110.96756 * 0.02562 * 4 3 2 6 6 C 1.39208 * 133.03534 * 180.02562 * 5 4 3 7 7 C 1.37766 * 120.24864 * 179.97438 * 6 5 4 8 8 O 1.35706 * 119.85070 * 179.97438 * 7 6 5 9 9 C 1.41668 * 120.29320 * 0.02562 * 7 6 5 10 10 C 1.41170 * 120.16379 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00264 * 26.35641 * 10 9 7 12 12 C 1.39876 * 119.99713 * 206.35254 * 10 9 7 13 13 N 1.30916 * 120.00189 * 199.49694 * 12 10 9 14 14 Si 1.86802 * 119.99837 * 19.50699 * 12 10 9 15 15 H 1.48501 * 109.46707 * 264.84959 * 14 12 10 16 16 H 1.48499 * 109.47111 * 24.84818 * 14 12 10 17 17 H 1.48501 * 109.47017 * 144.85301 * 14 12 10 18 18 C 1.40372 * 119.66864 * 0.23161 * 9 7 6 19 19 C 1.38741 * 119.46059 * 359.49635 * 18 9 7 20 20 H 1.09000 * 109.46507 * 90.02481 * 1 2 3 21 21 H 1.09001 * 109.47046 * 210.02617 * 1 2 3 22 22 H 1.09003 * 109.46595 * 330.02734 * 1 2 3 23 23 H 1.07995 * 124.85437 * 0.03026 * 3 2 1 24 24 H 1.07997 * 119.87921 * 359.97438 * 6 5 4 25 25 H 0.96700 * 113.99909 * 269.61424 * 8 7 6 26 26 H 0.96992 * 119.99997 * 180.02562 * 13 12 10 27 27 H 1.07991 * 120.27323 * 179.72547 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3112 1.0705 0.0000 4 8 3.5999 0.6855 0.0006 5 6 3.7019 -0.6589 0.0004 6 6 4.7883 -1.5293 0.0012 7 6 4.5859 -2.8920 0.0013 8 8 5.6508 -3.7331 0.0016 9 6 3.2709 -3.4191 0.0000 10 6 3.0666 -4.8159 -0.0005 11 1 3.8173 -5.4716 0.4153 12 6 1.8918 -5.3507 -0.5394 13 7 1.5151 -6.5619 -0.2154 14 14 0.8606 -4.3367 -1.7217 15 1 -0.2208 -3.6494 -0.9710 16 1 1.7210 -3.3256 -2.3871 17 1 0.2618 -5.2289 -2.7467 18 6 2.1722 -2.5455 -0.0063 19 6 2.3898 -1.1753 -0.0006 20 1 -0.3632 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3632 0.8903 0.5134 23 1 1.9733 2.0962 0.0005 24 1 5.7937 -1.1348 0.0018 25 1 5.9560 -3.9816 -0.8817 26 1 0.7007 -6.9328 -0.5894 27 1 1.1656 -2.9367 -0.0119 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261283120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -29.027483 kcal Electronic energy + Delta-G solvation = -14260.933665 eV Core-core repulsion = 11756.944463 eV Total energy + Delta-G solvation = -2503.989202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35037 -37.93215 -35.10446 -33.53458 -32.93811 -30.23165 -28.23393 -26.48806 -25.12683 -22.28235 -20.76731 -19.29220 -17.84711 -17.17411 -16.41582 -15.28397 -15.26627 -14.83730 -14.15376 -13.58097 -13.24891 -13.06239 -12.76808 -12.51853 -12.15996 -11.80405 -11.48929 -11.04869 -10.69706 -10.55666 -10.22412 -9.87597 -9.58501 -9.04785 -8.91621 -7.55900 -7.15633 -7.04946 -4.51955 1.84067 2.45927 3.03100 3.07156 3.21014 3.26197 3.68624 3.90818 4.29359 5.10513 5.19812 5.44916 5.49387 5.64813 5.88316 5.97043 6.16659 6.25621 6.39767 6.50639 6.80119 6.86499 7.14130 7.18881 7.39049 7.48586 7.70684 8.05704 8.23283 8.35519 8.67659 8.80921 9.96030 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.013820 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.881743 B = 2025.548544 C = 2903.998913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.201 4.201 3 C -0.013 4.013 4 O -0.206 6.206 5 C -0.050 4.050 6 C -0.101 4.101 7 C 0.048 3.952 8 O -0.487 6.487 9 C 0.064 3.936 10 C -0.429 4.429 11 H 0.100 0.900 12 C 0.083 3.917 13 N -0.798 5.798 14 Si 0.912 3.088 15 H -0.269 1.269 16 H -0.245 1.245 17 H -0.291 1.291 18 C -0.216 4.216 19 C -0.075 4.075 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.191 0.809 24 H 0.112 0.888 25 H 0.370 0.630 26 H 0.287 0.713 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 8.554 -2.636 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.203 4.203 3 C -0.078 4.078 4 O -0.109 6.109 5 C -0.096 4.096 6 C -0.120 4.120 7 C 0.003 3.997 8 O -0.295 6.295 9 C 0.060 3.940 10 C -0.456 4.456 11 H 0.117 0.883 12 C -0.137 4.137 13 N -0.421 5.421 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.168 1.168 17 H -0.219 1.219 18 C -0.236 4.236 19 C -0.076 4.076 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.208 0.792 24 H 0.130 0.870 25 H 0.223 0.777 26 H 0.098 0.902 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.158 8.472 -2.007 8.783 hybrid contribution -0.682 0.211 -0.963 1.199 sum -1.839 8.683 -2.970 9.359 Atomic orbital electron populations 1.20057 0.89918 1.01967 1.01389 1.21084 0.95941 0.92377 1.10914 1.23300 0.80926 0.98575 1.05029 1.83798 1.27019 1.22059 1.77986 1.18843 0.94940 0.80121 1.15695 1.19544 0.95427 0.90965 1.06066 1.17976 0.86608 0.86436 1.08716 1.84747 1.46947 1.65726 1.32098 1.17835 0.90025 0.94029 0.92110 1.19383 1.02817 0.90901 1.32524 0.88256 1.26227 0.96504 0.95099 0.95884 1.69734 1.21502 1.15967 1.34941 0.86299 0.80166 0.79639 0.80015 1.19492 1.16798 1.21873 1.20122 0.97772 0.90088 1.15622 1.19487 0.91691 0.93556 1.02820 0.92147 0.91756 0.92179 0.79242 0.86959 0.77659 0.90241 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.43 36.01 0.38 -0.83 15 2 C -0.20 -3.92 6.36 -102.61 -0.65 -4.57 15 3 C -0.01 -0.22 11.88 29.20 0.35 0.13 15 4 O -0.21 -4.22 10.58 3.71 0.04 -4.18 15 5 C -0.05 -1.15 7.42 -38.18 -0.28 -1.43 15 6 C -0.10 -2.24 9.96 -39.39 -0.39 -2.63 15 7 C 0.05 1.13 6.72 -38.45 -0.26 0.88 15 8 O -0.49 -10.41 12.76 -18.82 -0.24 -10.65 15 9 C 0.06 1.63 5.20 -106.67 -0.56 1.08 15 10 C -0.43 -11.52 9.21 -37.86 -0.35 -11.87 15 11 H 0.10 2.82 7.82 -52.49 -0.41 2.41 15 12 C 0.08 2.15 5.40 -17.33 -0.09 2.05 15 13 N -0.80 -20.93 13.93 55.54 0.77 -20.16 15 14 Si 0.91 20.69 24.45 -169.99 -4.16 16.53 15 15 H -0.27 -5.94 6.64 56.52 0.38 -5.57 15 16 H -0.24 -5.73 6.83 56.52 0.39 -5.34 15 17 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 18 C -0.22 -5.41 7.22 -38.59 -0.28 -5.68 15 19 C -0.07 -1.75 6.36 -105.12 -0.67 -2.42 15 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.19 2.30 8.06 -52.49 -0.42 1.87 15 24 H 0.11 2.19 8.06 -52.49 -0.42 1.77 15 25 H 0.37 6.13 9.06 45.56 0.41 6.54 15 26 H 0.29 6.79 8.30 -40.82 -0.34 6.45 15 27 H 0.11 2.67 4.30 -52.49 -0.23 2.44 15 LS Contribution 238.50 15.07 3.59 3.59 Total: -1.00 -29.76 238.50 -4.31 -34.08 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -1.51 Total: 6.09 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.81 Total: -25.31 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.77 Total: -20.16 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.20 Total: -14.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.16 Total: 16.53 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.76 -4.31 -34.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.048 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds