Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33885 * 126.91440 * 2 1 4 4 O 1.34503 * 110.28326 * 179.97438 * 3 2 1 5 5 C 1.34826 * 110.96756 * 0.02562 * 4 3 2 6 6 C 1.39208 * 133.03534 * 180.02562 * 5 4 3 7 7 C 1.37766 * 120.24864 * 179.97438 * 6 5 4 8 8 O 1.35706 * 119.85070 * 179.97438 * 7 6 5 9 9 C 1.41668 * 120.29320 * 0.02562 * 7 6 5 10 10 C 1.41170 * 120.16379 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00264 * 26.35641 * 10 9 7 12 12 C 1.39876 * 119.99713 * 206.35254 * 10 9 7 13 13 N 1.30916 * 120.00189 * 199.49694 * 12 10 9 14 14 Si 1.86802 * 119.99837 * 19.50699 * 12 10 9 15 15 H 1.48501 * 109.46707 * 264.84959 * 14 12 10 16 16 H 1.48499 * 109.47111 * 24.84818 * 14 12 10 17 17 H 1.48501 * 109.47017 * 144.85301 * 14 12 10 18 18 C 1.40372 * 119.66864 * 0.23161 * 9 7 6 19 19 C 1.38741 * 119.46059 * 359.49635 * 18 9 7 20 20 H 1.09000 * 109.46507 * 90.02481 * 1 2 3 21 21 H 1.09001 * 109.47046 * 210.02617 * 1 2 3 22 22 H 1.09003 * 109.46595 * 330.02734 * 1 2 3 23 23 H 1.07995 * 124.85437 * 0.03026 * 3 2 1 24 24 H 1.07997 * 119.87921 * 359.97438 * 6 5 4 25 25 H 0.96700 * 113.99909 * 269.61424 * 8 7 6 26 26 H 0.96992 * 119.99997 * 180.02562 * 13 12 10 27 27 H 1.07991 * 120.27323 * 179.72547 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3112 1.0705 0.0000 4 8 3.5999 0.6855 0.0006 5 6 3.7019 -0.6589 0.0004 6 6 4.7883 -1.5293 0.0012 7 6 4.5859 -2.8920 0.0013 8 8 5.6508 -3.7331 0.0016 9 6 3.2709 -3.4191 0.0000 10 6 3.0666 -4.8159 -0.0005 11 1 3.8173 -5.4716 0.4153 12 6 1.8918 -5.3507 -0.5394 13 7 1.5151 -6.5619 -0.2154 14 14 0.8606 -4.3367 -1.7217 15 1 -0.2208 -3.6494 -0.9710 16 1 1.7210 -3.3256 -2.3871 17 1 0.2618 -5.2289 -2.7467 18 6 2.1722 -2.5455 -0.0063 19 6 2.3898 -1.1753 -0.0006 20 1 -0.3632 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3632 0.8903 0.5134 23 1 1.9733 2.0962 0.0005 24 1 5.7937 -1.1348 0.0018 25 1 5.9560 -3.9816 -0.8817 26 1 0.7007 -6.9328 -0.5894 27 1 1.1656 -2.9367 -0.0119 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261283120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -50.165663 kcal Electronic energy + Delta-G solvation = -14261.850286 eV Core-core repulsion = 11756.944463 eV Total energy + Delta-G solvation = -2504.905823 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.97497 -39.70365 -36.87856 -35.38674 -34.44507 -32.09225 -29.90524 -27.87487 -26.99279 -24.06168 -22.53082 -20.90225 -19.67498 -18.91292 -18.06830 -17.06476 -16.91128 -16.53896 -15.94775 -15.35517 -14.96248 -14.56721 -14.33603 -13.97037 -13.77001 -13.41882 -13.01297 -12.88233 -12.43778 -12.35334 -11.98568 -11.67479 -11.45843 -10.86244 -10.49443 -9.42783 -8.98671 -8.78750 -6.51410 0.16778 0.60970 1.21777 1.30855 1.43450 1.59269 2.06591 2.13311 2.42394 3.23836 3.67937 3.83081 3.97927 4.18490 4.38455 4.60722 4.70012 4.83389 4.86146 4.99738 5.13915 5.19508 5.38296 5.50651 5.60068 5.78774 5.87852 6.16982 6.37880 6.54556 6.69908 7.13411 8.09015 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.013820 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.881743 B = 2025.548544 C = 2903.998913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.226 4.226 3 C 0.014 3.986 4 O -0.208 6.208 5 C -0.056 4.056 6 C -0.099 4.099 7 C 0.038 3.962 8 O -0.494 6.494 9 C 0.044 3.956 10 C -0.462 4.462 11 H 0.066 0.934 12 C 0.051 3.949 13 N -0.836 5.836 14 Si 0.965 3.035 15 H -0.260 1.260 16 H -0.258 1.258 17 H -0.273 1.273 18 C -0.228 4.228 19 C -0.101 4.101 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.098 0.902 23 H 0.252 0.748 24 H 0.141 0.859 25 H 0.391 0.609 26 H 0.297 0.703 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 11.801 -3.259 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.227 4.227 3 C -0.050 4.050 4 O -0.111 6.111 5 C -0.102 4.102 6 C -0.117 4.117 7 C -0.008 4.008 8 O -0.305 6.305 9 C 0.041 3.959 10 C -0.491 4.491 11 H 0.084 0.916 12 C -0.165 4.165 13 N -0.461 5.461 14 Si 0.789 3.211 15 H -0.186 1.186 16 H -0.182 1.182 17 H -0.200 1.200 18 C -0.248 4.248 19 C -0.102 4.102 20 H 0.090 0.910 21 H 0.066 0.934 22 H 0.117 0.883 23 H 0.267 0.733 24 H 0.159 0.841 25 H 0.247 0.753 26 H 0.107 0.893 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.914 11.712 -2.636 12.157 hybrid contribution -0.345 -0.576 -0.720 0.984 sum -2.259 11.137 -3.356 11.849 Atomic orbital electron populations 1.20149 0.87437 1.03099 1.02489 1.21532 0.97866 0.91112 1.12237 1.24410 0.79006 1.00595 1.01024 1.83839 1.29004 1.20448 1.77770 1.19095 0.94906 0.81403 1.14793 1.19770 0.96897 0.90296 1.04786 1.18088 0.86378 0.87396 1.08924 1.84671 1.46168 1.65621 1.34018 1.18046 0.91533 0.93676 0.92667 1.19265 1.03234 0.91372 1.35204 0.91624 1.26810 0.97097 0.95922 0.96660 1.69748 1.22721 1.17195 1.36475 0.85493 0.78797 0.78297 0.78507 1.18617 1.18222 1.19951 1.20175 0.97307 0.91120 1.16173 1.19990 0.93589 0.94040 1.02587 0.91026 0.93426 0.88301 0.73260 0.84141 0.75287 0.89251 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 10.43 71.24 0.74 -1.33 15 2 C -0.23 -7.98 6.36 -18.56 -0.12 -8.10 15 3 C 0.01 0.42 11.88 66.83 0.79 1.21 15 4 O -0.21 -7.70 10.58 -9.64 -0.10 -7.80 15 5 C -0.06 -2.44 7.42 23.18 0.17 -2.27 15 6 C -0.10 -4.24 9.96 22.39 0.22 -4.02 15 7 C 0.04 1.79 6.72 23.01 0.15 1.94 15 8 O -0.49 -21.36 12.76 -90.27 -1.15 -22.51 15 9 C 0.04 2.31 5.20 -21.19 -0.11 2.20 15 10 C -0.46 -26.10 9.21 23.39 0.22 -25.89 15 11 H 0.07 4.01 7.82 -2.91 -0.02 3.99 15 12 C 0.05 2.75 5.40 85.23 0.46 3.21 15 13 N -0.84 -45.43 13.93 21.82 0.30 -45.13 15 14 Si 0.96 43.20 24.45 68.60 1.68 44.88 15 15 H -0.26 -11.17 6.64 99.48 0.66 -10.51 15 16 H -0.26 -11.98 6.83 99.48 0.68 -11.30 15 17 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 18 C -0.23 -11.46 7.22 22.91 0.17 -11.29 15 19 C -0.10 -4.60 6.36 -20.19 -0.13 -4.72 15 20 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.25 4.13 8.06 -2.91 -0.02 4.11 15 24 H 0.14 5.13 8.06 -2.91 -0.02 5.11 15 25 H 0.39 13.04 9.06 -74.06 -0.67 12.37 15 26 H 0.30 14.39 8.30 -92.71 -0.77 13.62 15 27 H 0.10 5.13 4.30 -2.92 -0.01 5.11 15 Total: -1.00 -66.28 238.50 3.77 -62.52 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.47 Total: 17.10 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 2.57 Total: -49.05 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.30 Total: -45.13 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.25 Total: -30.31 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.68 Total: 44.88 kcal Total: -66.28 3.77 -62.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.354 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds