Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00290 * 2 1 4 4 H 1.48502 * 109.47097 * 240.00282 * 3 2 1 5 5 H 1.48505 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47376 * 120.00148 * 3 2 1 7 7 C 1.37879 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00126 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46951 * 59.99487 * 9 7 2 11 11 O 1.42905 * 109.46941 * 299.99732 * 9 7 2 12 12 C 1.50698 * 109.47234 * 179.97438 * 9 7 2 13 13 S 1.75889 * 125.19651 * 74.97669 * 12 9 7 14 14 C 1.75881 * 90.97788 * 179.97438 * 13 12 9 15 15 C 1.33403 * 109.60964 * 359.97438 * 14 13 12 16 16 C 1.33440 * 125.20492 * 254.97660 * 12 9 7 17 17 Cl 1.73593 * 122.54678 * 0.02562 * 16 12 9 18 18 H 0.96998 * 119.99550 * 0.02562 * 1 2 3 19 19 H 0.96696 * 113.99730 * 299.99382 * 11 9 7 20 20 H 1.08004 * 125.19405 * 179.97438 * 14 13 12 21 21 H 1.08003 * 122.54324 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 8 0.4290 -2.5746 1.1671 12 6 2.2302 -3.6447 0.0005 13 16 3.1722 -4.1732 1.3887 14 6 3.9217 -5.4457 0.4337 15 6 3.4482 -5.4079 -0.8129 16 6 2.5153 -4.4131 -1.0525 17 17 1.7721 -4.1837 -2.6045 18 1 -0.4849 0.8401 -0.0004 19 1 0.9209 -2.5292 1.9984 20 1 4.6536 -6.1502 0.8004 21 1 3.7687 -6.1002 -1.5774 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285597.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = -28.732112 kcal Electronic energy + Delta-G solvation = -10599.365147 eV Core-core repulsion = 8399.875680 eV Total energy + Delta-G solvation = -2199.489467 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.79090 -35.65725 -35.25119 -32.24365 -29.81048 -26.40609 -23.81796 -21.72604 -18.95260 -17.12883 -16.89647 -15.45940 -14.67154 -14.07350 -13.41165 -13.25916 -12.91765 -12.67291 -11.76845 -11.31452 -11.09006 -10.92827 -10.80691 -10.61218 -10.26967 -10.22141 -9.43180 -8.74826 -8.54041 -8.03512 -7.81749 -6.10122 -4.30066 1.46490 1.89635 2.31554 3.02479 3.25999 3.26923 3.31281 3.34273 4.33489 5.16021 5.33612 5.56472 6.05144 6.13417 6.25080 6.60174 6.63451 7.49597 7.73007 7.97296 8.69897 9.15507 9.44582 10.93445 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.011601 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.888902 B = 2413.039559 C = 2733.937068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.083 3.917 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.283 3.717 10 H 0.089 0.911 11 O -0.554 6.554 12 C -0.131 4.131 13 S 0.126 5.874 14 C -0.242 4.242 15 C -0.118 4.118 16 C -0.088 4.088 17 Cl -0.060 7.060 18 H 0.264 0.736 19 H 0.345 0.655 20 H 0.162 0.838 21 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 -8.089 0.408 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.125 4.125 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.604 4.604 8 H 0.078 0.922 9 C 0.224 3.776 10 H 0.106 0.894 11 O -0.356 6.356 12 C -0.250 4.250 13 S 0.388 5.612 14 C -0.377 4.377 15 C -0.150 4.150 16 C -0.125 4.125 17 Cl -0.032 7.032 18 H 0.074 0.926 19 H 0.189 0.811 20 H 0.180 0.820 21 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.434 -7.557 1.299 9.398 hybrid contribution 0.918 0.441 -1.334 1.678 sum 6.352 -7.116 -0.035 9.539 Atomic orbital electron populations 1.70061 1.05956 1.26998 1.46026 1.25022 0.94774 0.99197 0.93482 0.86621 0.79685 0.82568 0.78926 1.19942 1.21029 1.19927 1.21446 0.93228 0.90094 1.55625 0.92204 1.18316 0.85895 0.85955 0.87437 0.89392 1.86666 1.37808 1.96059 1.15083 1.26438 1.02384 1.01670 0.94539 1.84136 1.37054 1.26531 1.13458 1.25315 1.08722 1.05764 0.97907 1.19811 0.98301 0.99536 0.97305 1.19565 1.03345 1.00978 0.88589 1.98312 1.81605 1.96854 1.26415 0.92587 0.81112 0.81996 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.78 12.84 55.43 0.71 -24.07 14 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 14 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 14 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 14 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 7 C -0.57 -15.36 8.75 -34.44 -0.30 -15.66 14 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 9 C 0.28 7.23 3.14 -29.04 -0.09 7.14 14 10 H 0.09 2.45 7.08 -51.93 -0.37 2.09 14 11 O -0.55 -14.27 12.70 -35.23 -0.45 -14.71 14 12 C -0.13 -2.83 5.38 -35.99 -0.19 -3.02 14 13 S 0.13 2.21 22.78 -107.50 -2.45 -0.24 14 14 C -0.24 -3.65 11.23 29.04 0.33 -3.33 14 15 C -0.12 -1.94 10.07 -41.19 -0.41 -2.35 14 16 C -0.09 -1.74 6.27 -41.17 -0.26 -2.00 14 17 Cl -0.06 -1.16 27.93 -51.86 -1.45 -2.61 14 18 H 0.26 7.24 8.31 -40.82 -0.34 6.90 14 19 H 0.34 7.87 8.53 45.56 0.39 8.26 14 20 H 0.16 1.87 8.06 -52.48 -0.42 1.44 14 21 H 0.14 1.90 8.06 -52.48 -0.42 1.47 14 LS Contribution 225.10 15.07 3.39 3.39 Total: -1.00 -29.37 225.10 -6.65 -36.02 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -0.36 Total: 3.33 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.03 Total: -17.05 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.71 Total: -24.07 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.45 Total: -14.71 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.45 Total: -0.24 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.45 Total: -2.61 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.37 -6.65 -36.02 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285597.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.291 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds