Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00290 * 2 1 4 4 H 1.48502 * 109.47097 * 240.00282 * 3 2 1 5 5 H 1.48505 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47376 * 120.00148 * 3 2 1 7 7 C 1.37879 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00126 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46951 * 59.99487 * 9 7 2 11 11 O 1.42905 * 109.46941 * 299.99732 * 9 7 2 12 12 C 1.50698 * 109.47234 * 179.97438 * 9 7 2 13 13 S 1.75889 * 125.19651 * 74.97669 * 12 9 7 14 14 C 1.75881 * 90.97788 * 179.97438 * 13 12 9 15 15 C 1.33403 * 109.60964 * 359.97438 * 14 13 12 16 16 C 1.33440 * 125.20492 * 254.97660 * 12 9 7 17 17 Cl 1.73593 * 122.54678 * 0.02562 * 16 12 9 18 18 H 0.96998 * 119.99550 * 0.02562 * 1 2 3 19 19 H 0.96696 * 113.99730 * 299.99382 * 11 9 7 20 20 H 1.08004 * 125.19405 * 179.97438 * 14 13 12 21 21 H 1.08003 * 122.54324 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 8 0.4290 -2.5746 1.1671 12 6 2.2302 -3.6447 0.0005 13 16 3.1722 -4.1732 1.3887 14 6 3.9217 -5.4457 0.4337 15 6 3.4482 -5.4079 -0.8129 16 6 2.5153 -4.4131 -1.0525 17 17 1.7721 -4.1837 -2.6045 18 1 -0.4849 0.8401 -0.0004 19 1 0.9209 -2.5292 1.9984 20 1 4.6536 -6.1502 0.8004 21 1 3.7687 -6.1002 -1.5774 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261285597.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = -48.957986 kcal Electronic energy + Delta-G solvation = -10600.242207 eV Core-core repulsion = 8399.875680 eV Total energy + Delta-G solvation = -2200.366527 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.29896 -37.49185 -36.77421 -34.33453 -31.45342 -28.25459 -25.45574 -23.44174 -20.40703 -19.09270 -18.50221 -16.96044 -16.71636 -15.81850 -15.14085 -14.82617 -14.44200 -14.20074 -13.53527 -13.10235 -12.99859 -12.77140 -12.29493 -12.11905 -12.10186 -11.67210 -11.32423 -10.77852 -10.52730 -9.50312 -9.25927 -8.17308 -6.44800 0.05005 0.44666 1.00055 1.40430 1.42347 1.50357 1.63931 1.76030 2.38046 3.08084 3.97209 4.22025 4.36036 4.56806 4.90272 5.16789 5.25399 5.52700 5.62420 5.94730 6.62571 7.21010 7.37960 8.86184 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.011601 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.888902 B = 2413.039559 C = 2733.937068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.032 3.968 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.575 4.575 8 H 0.057 0.943 9 C 0.288 3.712 10 H 0.052 0.948 11 O -0.570 6.570 12 C -0.188 4.188 13 S 0.146 5.854 14 C -0.206 4.206 15 C -0.135 4.135 16 C -0.083 4.083 17 Cl -0.067 7.067 18 H 0.265 0.735 19 H 0.355 0.645 20 H 0.210 0.790 21 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -9.043 0.884 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.613 4.613 8 H 0.076 0.924 9 C 0.229 3.771 10 H 0.069 0.931 11 O -0.375 6.375 12 C -0.307 4.307 13 S 0.408 5.592 14 C -0.341 4.341 15 C -0.165 4.165 16 C -0.122 4.122 17 Cl -0.039 7.039 18 H 0.074 0.926 19 H 0.200 0.800 20 H 0.227 0.773 21 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.572 -8.516 1.782 11.534 hybrid contribution 0.299 0.612 -1.460 1.612 sum 7.871 -7.904 0.322 11.159 Atomic orbital electron populations 1.70191 1.07586 1.27818 1.47573 1.25863 0.95509 1.02744 0.93050 0.85595 0.78439 0.78285 0.79238 1.19540 1.20680 1.18821 1.21732 0.93195 0.91355 1.54988 0.92428 1.17863 0.85952 0.87377 0.85943 0.93076 1.86593 1.38765 1.96265 1.15828 1.25955 1.04595 1.02574 0.97528 1.83981 1.36192 1.27163 1.11897 1.25901 1.07338 1.04276 0.96591 1.20044 0.98040 0.99541 0.98861 1.20025 1.03179 1.01126 0.87829 1.98307 1.81867 1.96921 1.26790 0.92611 0.79993 0.77329 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.10 12.84 21.45 0.28 -52.82 14 2 C 0.03 1.76 5.40 84.65 0.46 2.22 14 3 Si 0.96 43.14 29.54 68.60 2.03 45.16 14 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 14 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 14 7 C -0.57 -31.63 8.75 25.60 0.22 -31.40 14 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 14 9 C 0.29 15.04 3.14 29.10 0.09 15.13 14 10 H 0.05 3.00 7.08 -2.38 -0.02 2.98 14 11 O -0.57 -30.20 12.70 -148.98 -1.89 -32.09 14 12 C -0.19 -8.04 5.38 24.60 0.13 -7.91 14 13 S 0.15 4.77 22.78 -56.49 -1.29 3.49 14 14 C -0.21 -5.29 11.23 66.72 0.75 -4.54 14 15 C -0.13 -3.96 10.07 21.23 0.21 -3.75 14 16 C -0.08 -3.20 6.27 21.24 0.13 -3.07 14 17 Cl -0.07 -2.58 27.93 -2.72 -0.08 -2.66 14 18 H 0.26 14.83 8.31 -92.71 -0.77 14.06 14 19 H 0.35 16.55 8.53 -74.06 -0.63 15.92 14 20 H 0.21 3.42 8.06 -2.91 -0.02 3.40 14 21 H 0.17 3.91 8.06 -2.91 -0.02 3.89 14 Total: -1.00 -64.03 225.10 1.68 -62.35 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.63 Total: 9.89 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 2.00 Total: -33.32 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.28 Total: -52.82 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.89 Total: -32.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.29 Total: 3.49 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.66 kcal Total: -64.03 1.68 -62.35 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285597.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.389 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds