Wall clock time and date at job start Mon Mar 30 2020 02:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36525 * 119.86795 * 2 1 4 4 C 1.38917 * 120.18826 * 179.97438 * 3 2 1 5 5 C 1.37872 * 120.40442 * 359.97438 * 4 3 2 6 6 C 1.38432 * 121.02562 * 359.70959 * 5 4 3 7 7 C 1.40529 * 119.86410 * 179.97438 * 2 1 3 8 8 C 1.41152 * 120.18687 * 0.02825 * 7 2 1 9 9 H 1.08003 * 119.99678 * 329.26816 * 8 7 2 10 10 C 1.39953 * 120.00628 * 149.26959 * 8 7 2 11 11 N 1.30852 * 119.99649 * 334.07416 * 10 8 7 12 12 Si 1.86795 * 120.00273 * 154.07504 * 10 8 7 13 13 H 1.48508 * 109.47138 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.46988 * 299.99941 * 12 10 8 15 15 H 1.48494 * 109.47121 * 60.00220 * 12 10 8 16 16 O 1.35173 * 110.91110 * 180.35554 * 6 5 4 17 17 C 1.33869 * 113.18328 * 0.27965 * 16 6 5 18 18 O 1.20826 * 126.66677 * 180.02562 * 17 16 6 19 19 C 1.51259 * 132.95574 * 180.02562 * 5 4 3 20 20 H 1.08997 * 109.47592 * 265.08262 * 1 2 3 21 21 H 1.09005 * 109.47122 * 25.08465 * 1 2 3 22 22 H 1.08998 * 109.47095 * 145.07905 * 1 2 3 23 23 H 1.08006 * 119.91130 * 359.97067 * 3 2 1 24 24 H 1.07995 * 119.79986 * 179.97438 * 4 3 2 25 25 H 0.96998 * 120.00174 * 354.24586 * 11 10 8 26 26 H 1.09006 * 110.66768 * 298.41087 * 19 5 4 27 27 H 1.09000 * 110.66639 * 61.54010 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1839 0.0000 4 6 3.5760 1.1917 0.0005 5 6 4.2804 0.0065 0.0016 6 6 3.6252 -1.2129 0.0082 7 6 2.2067 -1.2187 0.0005 8 6 1.5020 -2.4417 0.0005 9 1 0.5356 -2.5081 0.4781 10 6 2.0556 -3.5684 -0.6184 11 7 2.9155 -3.4227 -1.5938 12 14 1.5668 -5.2799 -0.0518 13 1 2.2888 -6.2943 -0.8614 14 1 1.9210 -5.4471 1.3806 15 1 0.1028 -5.4591 -0.2240 16 8 4.5092 -2.2356 0.0158 17 6 5.7848 -1.8295 0.0212 18 8 6.7662 -2.5341 0.0280 19 6 5.7587 -0.3140 0.0029 20 1 -0.3634 -0.0881 1.0238 21 1 -0.3634 0.9308 -0.4357 22 1 -0.3633 -0.8426 -0.5883 23 1 1.6432 2.1172 -0.0005 24 1 4.1075 2.1318 0.0001 25 1 3.1064 -2.5386 -1.9441 26 1 6.2382 0.0784 -0.8940 27 1 6.2369 0.0799 0.8997 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287600.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:13 Heat of formation + Delta-G solvation = -72.664674 kcal Electronic energy + Delta-G solvation = -14541.698081 eV Core-core repulsion = 12035.816628 eV Total energy + Delta-G solvation = -2505.881453 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.89527 -39.62222 -38.26959 -36.00040 -33.89441 -31.17535 -30.61391 -27.32453 -26.13236 -23.86991 -22.54161 -21.45626 -19.66072 -18.24479 -17.93050 -17.75617 -16.39706 -15.88013 -15.63135 -15.09772 -14.62687 -14.33039 -14.15563 -13.87817 -13.67130 -13.46496 -12.88408 -12.81611 -12.46054 -12.20791 -12.02225 -11.88219 -11.47940 -11.10193 -10.78215 -9.50185 -9.19207 -9.07164 -6.45046 0.41604 0.76602 1.24772 1.46375 1.59154 1.73556 2.08141 2.31454 2.66457 2.97126 3.35802 3.50022 4.22928 4.37041 4.37933 4.57236 4.67475 4.79359 4.99240 5.06276 5.13857 5.39465 5.50086 5.68196 5.74581 5.88732 6.00073 6.21939 6.31238 6.40495 6.74142 6.92871 8.05350 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.016853 C = 0.009973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.410375 B = 1661.027496 C = 2806.870619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.180 4.180 3 C -0.089 4.089 4 C -0.188 4.188 5 C -0.135 4.135 6 C -0.070 4.070 7 C 0.078 3.922 8 C -0.542 4.542 9 H 0.086 0.914 10 C 0.004 3.996 11 N -0.797 5.797 12 Si 1.106 2.894 13 H -0.280 1.280 14 H -0.272 1.272 15 H -0.246 1.246 16 O -0.274 6.274 17 C 0.469 3.531 18 O -0.497 6.497 19 C -0.125 4.125 20 H 0.059 0.941 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.142 0.858 24 H 0.140 0.860 25 H 0.275 0.725 26 H 0.146 0.854 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 6.965 2.348 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.181 4.181 3 C -0.107 4.107 4 C -0.207 4.207 5 C -0.136 4.136 6 C -0.113 4.113 7 C 0.075 3.925 8 C -0.570 4.570 9 H 0.104 0.896 10 C -0.214 4.214 11 N -0.420 5.420 12 Si 0.924 3.076 13 H -0.205 1.205 14 H -0.197 1.197 15 H -0.170 1.170 16 O -0.185 6.185 17 C 0.314 3.686 18 O -0.387 6.387 19 C -0.162 4.162 20 H 0.077 0.923 21 H 0.093 0.907 22 H 0.067 0.933 23 H 0.160 0.840 24 H 0.158 0.842 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.190 4.825 2.056 5.378 hybrid contribution 0.077 1.355 0.073 1.359 sum -1.112 6.180 2.128 6.630 Atomic orbital electron populations 1.20426 0.90302 1.01771 1.01199 1.19719 0.96709 0.91436 1.10220 1.20727 0.93765 0.97276 0.98925 1.19937 0.93560 0.95359 1.11838 1.20391 0.93920 0.94195 1.05089 1.19601 0.90804 0.83983 1.16883 1.17249 0.86923 0.94902 0.93411 1.20632 1.06771 0.95242 1.34324 0.89568 1.28183 0.91772 1.09160 0.92312 1.70552 1.25050 1.28333 1.18022 0.83143 0.78078 0.69618 0.76744 1.20505 1.19713 1.16957 1.84065 1.17328 1.38996 1.78071 1.23625 0.81097 0.92211 0.71641 1.90622 1.32614 1.66012 1.49435 1.21516 0.95353 0.91233 1.08058 0.92273 0.90669 0.93322 0.84026 0.84221 0.91360 0.83666 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.85 9.27 71.23 0.66 -2.19 15 2 C -0.18 -7.64 5.89 -19.71 -0.12 -7.75 15 3 C -0.09 -3.23 9.60 22.03 0.21 -3.02 15 4 C -0.19 -6.74 10.04 22.35 0.22 -6.52 15 5 C -0.14 -5.55 6.36 -19.73 -0.13 -5.68 15 6 C -0.07 -3.51 5.62 23.21 0.13 -3.38 15 7 C 0.08 3.96 5.17 -21.11 -0.11 3.85 15 8 C -0.54 -28.27 7.89 23.40 0.18 -28.09 15 9 H 0.09 4.27 7.23 -2.91 -0.02 4.25 15 10 C 0.00 0.19 4.65 85.25 0.40 0.59 15 11 N -0.80 -45.09 11.87 21.83 0.26 -44.83 15 12 Si 1.11 45.68 30.00 68.60 2.06 47.73 15 13 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 14 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 15 H -0.25 -8.86 7.11 99.48 0.71 -8.15 15 16 O -0.27 -14.60 8.01 16.04 0.13 -14.47 15 17 C 0.47 21.60 8.96 71.52 0.64 22.24 15 18 O -0.50 -24.49 18.00 21.55 0.39 -24.10 15 19 C -0.12 -4.35 6.95 29.56 0.21 -4.14 15 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.07 2.16 8.04 -2.38 -0.02 2.14 15 22 H 0.05 1.86 7.10 -2.39 -0.02 1.85 15 23 H 0.14 4.00 8.05 -2.91 -0.02 3.98 15 24 H 0.14 3.91 8.06 -2.91 -0.02 3.89 15 25 H 0.27 16.07 6.89 -92.71 -0.64 15.43 15 26 H 0.15 4.21 8.14 -2.38 -0.02 4.20 15 27 H 0.15 4.15 8.14 -2.39 -0.02 4.13 15 Total: -1.00 -63.91 239.38 6.46 -57.45 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.32 Total: 12.31 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 2.30 Total: -34.09 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.26 Total: -44.83 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: 0.52 Total: -38.57 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.06 Total: 47.73 kcal Total: -63.91 6.46 -57.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287600.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.212 kcal (2) G-P(sol) polarization free energy of solvation -63.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds