Wall clock time and date at job start Mon Mar 30 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48504 * 109.47241 * 269.99934 * 3 2 1 5 5 H 1.48495 * 109.47396 * 29.99728 * 3 2 1 6 6 H 1.48498 * 109.47537 * 149.99774 * 3 2 1 7 7 C 1.37876 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00570 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99587 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47291 * 299.99589 * 9 7 2 11 11 N 1.46902 * 109.47288 * 60.00058 * 9 7 2 12 12 C 1.50704 * 109.46719 * 179.97438 * 9 7 2 13 13 C 1.38721 * 119.79416 * 280.01911 * 12 9 7 14 14 C 1.37903 * 120.48018 * 179.97438 * 13 12 9 15 15 C 1.38678 * 119.87337 * 0.02562 * 14 13 12 16 16 O 1.35114 * 133.94586 * 180.31855 * 15 14 13 17 17 C 1.34232 * 108.15901 * 180.02562 * 16 15 14 18 18 N 1.29910 * 110.28737 * 359.62265 * 17 16 15 19 19 C 1.36054 * 108.79983 * 0.23544 * 18 17 16 20 20 C 1.37686 * 119.78743 * 100.00117 * 12 9 7 21 21 H 0.97002 * 119.99927 * 0.02562 * 1 2 3 22 22 H 1.00902 * 110.99668 * 296.04421 * 11 9 7 23 23 H 1.00901 * 110.99686 * 59.99960 * 11 9 7 24 24 H 1.08005 * 119.75612 * 359.96275 * 13 12 9 25 25 H 1.07994 * 120.06304 * 180.02562 * 14 13 12 26 26 H 1.08002 * 124.85815 * 179.89691 * 17 16 15 27 27 H 1.08004 * 120.13528 * 0.04034 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.8376 -4.0323 -1.1849 14 6 3.7363 -5.0782 -1.2011 15 6 4.0366 -5.7491 -0.0252 16 8 4.8538 -6.7797 0.2839 17 6 4.7464 -7.0185 1.6005 18 7 3.9088 -6.1863 2.1423 19 6 3.4250 -5.3597 1.1761 20 6 2.5172 -4.2993 1.1773 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3004 -1.8577 -1.1911 23 1 0.9653 -2.5260 -2.0381 24 1 2.6045 -3.5114 -2.1019 25 1 4.2053 -5.3742 -2.1278 26 1 5.2832 -7.7890 2.1339 27 1 2.0416 -3.9938 2.0976 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:52 Heat of formation + Delta-G solvation = 10.833557 kcal Electronic energy + Delta-G solvation = -13947.021189 eV Core-core repulsion = 11477.053243 eV Total energy + Delta-G solvation = -2469.967947 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.09951 -39.48207 -36.34688 -35.53537 -33.38909 -31.43336 -30.23205 -27.95418 -25.15162 -24.42894 -22.74789 -22.17804 -18.79266 -18.50029 -18.14001 -17.56216 -17.38690 -16.37350 -15.55305 -15.11980 -15.03324 -14.83728 -14.18259 -13.61443 -13.38469 -13.05279 -12.86032 -12.67551 -12.50404 -12.39444 -11.90663 -11.71560 -11.35123 -10.72985 -9.57880 -9.43718 -9.17015 -8.13583 -6.39784 -0.15437 0.35369 1.37675 1.40568 1.50055 1.57935 1.72424 2.35693 2.77233 3.03352 3.16140 3.60472 4.02541 4.25445 4.31538 4.40296 4.49971 4.66862 5.02508 5.09807 5.16485 5.36060 5.43258 5.63319 5.69644 5.90067 6.04183 6.61867 6.66417 6.89330 7.12156 7.37216 8.81064 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.046465 B = 0.007455 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.453520 B = 3754.721533 C = 3875.558912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.560 4.560 8 H 0.048 0.952 9 C 0.246 3.754 10 H 0.013 0.987 11 N -0.841 5.841 12 C -0.042 4.042 13 C -0.081 4.081 14 C -0.087 4.087 15 C -0.022 4.022 16 O -0.220 6.220 17 C 0.245 3.755 18 N -0.529 5.529 19 C 0.002 3.998 20 C -0.095 4.095 21 H 0.269 0.731 22 H 0.348 0.652 23 H 0.322 0.678 24 H 0.149 0.851 25 H 0.166 0.834 26 H 0.312 0.688 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 -10.374 -1.827 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.067 0.933 9 C 0.136 3.864 10 H 0.031 0.969 11 N -0.371 5.371 12 C -0.044 4.044 13 C -0.099 4.099 14 C -0.105 4.105 15 C -0.071 4.071 16 O -0.112 6.112 17 C 0.014 3.986 18 N -0.258 5.258 19 C -0.108 4.108 20 C -0.115 4.115 21 H 0.078 0.922 22 H 0.163 0.837 23 H 0.133 0.867 24 H 0.167 0.833 25 H 0.183 0.817 26 H 0.327 0.673 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.178 -10.945 -0.924 13.693 hybrid contribution 0.627 2.012 -0.368 2.140 sum 8.805 -8.932 -1.292 12.609 Atomic orbital electron populations 1.69837 1.06915 1.28125 1.50446 1.25716 0.95725 1.02276 0.93847 0.85533 0.78401 0.79078 0.78448 1.19552 1.20802 1.20117 1.21986 0.93371 0.92116 1.52506 0.93337 1.17762 0.88882 0.88704 0.91046 0.96949 1.59481 1.18112 1.55522 1.03944 1.20188 0.96534 0.95031 0.92640 1.20996 0.94845 0.95625 0.98476 1.20105 0.99614 0.95426 0.95366 1.20429 0.96610 0.92549 0.97554 1.84486 1.54434 1.43323 1.28936 1.29488 0.93885 0.97723 0.77461 1.70539 1.14349 1.07938 1.32951 1.19865 1.01585 0.99292 0.90054 1.20102 0.98146 0.94507 0.98713 0.92184 0.83740 0.86704 0.83327 0.81677 0.67323 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.93 11.54 21.45 0.25 -49.68 15 2 C 0.03 1.33 5.38 84.65 0.46 1.78 15 3 Si 0.96 42.35 29.54 68.60 2.03 44.37 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.56 -29.94 8.70 25.60 0.22 -29.72 15 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 9 C 0.25 12.38 2.94 43.43 0.13 12.51 15 10 H 0.01 0.71 7.99 -2.39 -0.02 0.69 15 11 N -0.84 -39.30 9.01 -174.94 -1.58 -40.88 15 12 C -0.04 -1.84 4.89 -19.88 -0.10 -1.94 15 13 C -0.08 -2.97 9.27 22.31 0.21 -2.77 15 14 C -0.09 -2.73 10.06 22.30 0.22 -2.50 15 15 C -0.02 -0.74 7.43 22.88 0.17 -0.57 15 16 O -0.22 -6.02 10.77 -9.97 -0.11 -6.13 15 17 C 0.24 5.55 13.13 130.53 1.71 7.26 15 18 N -0.53 -17.73 11.34 -308.42 -3.50 -21.23 15 19 C 0.00 0.07 7.24 39.32 0.28 0.35 15 20 C -0.10 -4.11 9.70 22.47 0.22 -3.89 15 21 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 22 H 0.35 17.52 7.08 -89.69 -0.63 16.88 15 23 H 0.32 13.71 7.31 -89.69 -0.66 13.05 15 24 H 0.15 4.98 6.63 -2.91 -0.02 4.96 15 25 H 0.17 3.85 8.06 -2.91 -0.02 3.83 15 26 H 0.31 2.28 8.06 -2.91 -0.02 2.26 15 27 H 0.11 5.08 8.03 -2.91 -0.02 5.05 15 Total: -1.00 -64.92 241.46 0.55 -64.37 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.07 Total: 28.66 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.53 Total: -19.49 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.83 Total: -111.79 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.11 Total: -6.13 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.92 0.55 -64.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.202 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds