Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46944 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00225 * 3 2 1 7 7 C 1.37879 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38716 * 119.78628 * 79.99607 * 12 9 7 14 14 C 1.37916 * 120.47564 * 179.97438 * 13 12 9 15 15 C 1.38672 * 119.87151 * 0.02562 * 14 13 12 16 16 O 1.35106 * 133.94494 * 179.97438 * 15 14 13 17 17 C 1.34227 * 108.16450 * 179.97438 * 16 15 14 18 18 N 1.29909 * 110.28784 * 0.02562 * 17 16 15 19 19 C 1.36058 * 108.79801 * 359.97438 * 18 17 16 20 20 C 1.37676 * 119.78786 * 259.72176 * 12 9 7 21 21 H 0.97001 * 119.99716 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 23 23 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 24 24 H 1.08002 * 119.76598 * 359.95752 * 13 12 9 25 25 H 1.08000 * 120.06290 * 180.02562 * 14 13 12 26 26 H 1.08001 * 124.85983 * 179.97438 * 17 16 15 27 27 H 1.08002 * 120.13954 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8747 -0.6807 0.8905 11 7 4.0017 -0.5007 -1.1988 12 6 4.0140 -2.6148 -0.0001 13 6 4.0470 -3.3339 -1.1858 14 6 4.5045 -4.6349 -1.2024 15 6 4.9346 -5.2308 -0.0264 16 8 5.4239 -6.4519 0.2815 17 6 5.6803 -6.4800 1.5988 18 7 5.3778 -5.3389 2.1410 19 6 4.9031 -4.5066 1.1750 20 6 4.4425 -3.1888 1.1756 21 1 -0.4850 0.8401 0.0004 22 1 3.6784 -0.9578 -2.0383 23 1 3.7322 0.4715 -1.1898 24 1 3.7117 -2.8719 -2.1026 25 1 4.5277 -5.1885 -2.1294 26 1 6.0800 -7.3300 2.1318 27 1 4.4186 -2.6233 2.0955 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288366.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = 18.542268 kcal Electronic energy + Delta-G solvation = -13989.807997 eV Core-core repulsion = 11520.174325 eV Total energy + Delta-G solvation = -2469.633672 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.12217 -39.60350 -36.49915 -35.55641 -33.91023 -31.58756 -30.41381 -28.12684 -25.22714 -24.42639 -22.77748 -22.15466 -19.19230 -18.60256 -18.26950 -17.70176 -17.56619 -16.45283 -15.85844 -15.25087 -15.08634 -14.90077 -14.34642 -13.96401 -13.65035 -13.17638 -12.86578 -12.65415 -12.57470 -12.30774 -11.97510 -11.65103 -11.37637 -10.91721 -9.75748 -9.45826 -9.28045 -8.40470 -6.50015 -0.17748 0.30914 1.25037 1.34578 1.43226 1.55995 1.70659 2.21454 2.70796 2.92105 3.12075 3.58239 3.84572 4.20872 4.22534 4.28583 4.36860 4.41599 4.86877 5.02428 5.06161 5.26500 5.35228 5.40074 5.63246 5.77240 6.02817 6.35415 6.54674 6.64542 6.70550 7.17031 8.75562 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054082 B = 0.007594 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.603754 B = 3686.334196 C = 3754.254158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.020 3.980 3 Si 0.938 3.062 4 H -0.250 1.250 5 H -0.294 1.294 6 H -0.248 1.248 7 C -0.549 4.549 8 H 0.033 0.967 9 C 0.217 3.783 10 H 0.043 0.957 11 N -0.836 5.836 12 C -0.040 4.040 13 C -0.082 4.082 14 C -0.087 4.087 15 C -0.020 4.020 16 O -0.220 6.220 17 C 0.245 3.755 18 N -0.527 5.527 19 C 0.001 3.999 20 C -0.091 4.091 21 H 0.270 0.730 22 H 0.342 0.658 23 H 0.319 0.681 24 H 0.151 0.849 25 H 0.165 0.835 26 H 0.312 0.688 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 -9.338 -1.717 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.175 1.175 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.589 4.589 8 H 0.052 0.948 9 C 0.107 3.893 10 H 0.061 0.939 11 N -0.370 5.370 12 C -0.042 4.042 13 C -0.100 4.100 14 C -0.106 4.106 15 C -0.069 4.069 16 O -0.112 6.112 17 C 0.015 3.985 18 N -0.256 5.256 19 C -0.109 4.109 20 C -0.110 4.110 21 H 0.079 0.921 22 H 0.155 0.845 23 H 0.135 0.865 24 H 0.168 0.832 25 H 0.183 0.817 26 H 0.327 0.673 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.286 -9.237 -0.828 15.394 hybrid contribution -1.429 0.823 -0.433 1.705 sum 10.857 -8.415 -1.261 13.793 Atomic orbital electron populations 1.70044 1.08187 1.28441 1.50846 1.25882 0.95548 1.02983 0.93554 0.85960 0.79134 0.78670 0.79991 1.17458 1.22074 1.17193 1.21784 0.91590 0.93403 1.52118 0.94841 1.18243 0.91043 0.88660 0.91339 0.93874 1.59657 1.66244 1.05579 1.05528 1.19801 0.94888 0.96561 0.92909 1.21017 0.97617 0.92754 0.98594 1.20102 1.00585 0.94447 0.95449 1.20451 1.04357 0.84530 0.97597 1.84489 1.66584 1.31190 1.28926 1.29497 0.93386 0.98213 0.77397 1.70545 1.18857 1.03358 1.32869 1.19875 1.04661 0.96319 0.90016 1.20128 0.99989 0.92146 0.98747 0.92127 0.84498 0.86523 0.83152 0.81702 0.67333 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.96 21.45 0.30 -56.19 15 2 C 0.02 1.11 5.47 84.65 0.46 1.57 15 3 Si 0.94 41.74 24.61 68.60 1.69 43.43 15 4 H -0.25 -10.11 7.01 99.48 0.70 -9.41 15 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 15 6 H -0.25 -10.56 6.54 99.48 0.65 -9.91 15 7 C -0.55 -30.24 9.28 25.60 0.24 -30.00 15 8 H 0.03 2.08 7.98 -2.91 -0.02 2.06 15 9 C 0.22 9.97 2.47 43.42 0.11 10.07 15 10 H 0.04 2.06 7.04 -2.39 -0.02 2.04 15 11 N -0.84 -33.89 8.97 -174.94 -1.57 -35.46 15 12 C -0.04 -1.65 4.89 -19.88 -0.10 -1.75 15 13 C -0.08 -2.88 9.27 22.31 0.21 -2.67 15 14 C -0.09 -2.69 10.06 22.30 0.22 -2.46 15 15 C -0.02 -0.65 7.43 22.88 0.17 -0.48 15 16 O -0.22 -5.90 10.77 -9.84 -0.11 -6.01 15 17 C 0.25 5.40 13.13 130.53 1.71 7.12 15 18 N -0.53 -17.16 11.34 -308.42 -3.50 -20.66 15 19 C 0.00 0.04 7.24 39.32 0.28 0.33 15 20 C -0.09 -3.72 9.70 22.46 0.22 -3.50 15 21 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 22 H 0.34 12.72 7.32 -89.69 -0.66 12.06 15 23 H 0.32 12.97 4.29 -89.70 -0.39 12.58 15 24 H 0.15 4.79 6.64 -2.91 -0.02 4.77 15 25 H 0.17 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.31 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.12 5.01 8.02 -2.91 -0.02 4.98 15 Total: -1.00 -70.17 234.97 0.46 -69.72 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.11 Total: 26.93 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.53 Total: -21.77 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.77 Total: -112.30 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.11 Total: -6.01 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.69 Total: 43.43 kcal Total: -70.17 0.46 -69.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288366.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.258 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds