Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46973 * 85.13728 * 3 2 1 5 5 H 1.48507 * 109.46777 * 325.13773 * 3 2 1 6 6 H 1.48496 * 109.47143 * 205.14079 * 3 2 1 7 7 C 1.37880 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99687 * 172.97395 * 7 2 1 9 9 C 1.50696 * 119.99982 * 352.97323 * 7 2 1 10 10 H 1.08999 * 109.47572 * 57.07376 * 9 7 2 11 11 N 1.46906 * 109.47149 * 297.07001 * 9 7 2 12 12 C 1.50709 * 109.47206 * 177.07645 * 9 7 2 13 13 C 1.38780 * 119.70279 * 79.72000 * 12 9 7 14 14 C 1.36626 * 120.51214 * 179.78049 * 13 12 9 15 15 C 1.39678 * 119.79176 * 0.47689 * 14 13 12 16 16 C 1.46577 * 133.73902 * 179.75665 * 15 14 13 17 17 N 1.29743 * 107.41723 * 180.02562 * 16 15 14 18 18 O 1.41360 * 109.74005 * 359.97438 * 17 16 15 19 19 C 1.34826 * 109.32838 * 0.02562 * 18 17 16 20 20 C 1.37802 * 119.69267 * 259.99940 * 12 9 7 21 21 H 0.97004 * 120.00397 * 0.02562 * 1 2 3 22 22 H 1.00901 * 110.99763 * 306.33557 * 11 9 7 23 23 H 1.00900 * 110.99836 * 70.28603 * 11 9 7 24 24 H 1.08004 * 119.74181 * 0.02562 * 13 12 9 25 25 H 1.08007 * 120.10193 * 180.25758 * 14 13 12 26 26 H 1.07998 * 126.28927 * 0.02562 * 16 15 14 27 27 H 1.07992 * 120.10524 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3938 2.1057 1.3951 5 1 1.5017 2.6208 -0.8003 6 1 3.5942 1.4127 -0.5948 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1976 -0.1139 9 6 1.2594 -2.4942 0.1608 10 1 0.5065 -2.5805 -0.6226 11 7 0.6042 -2.5243 1.4753 12 6 2.2277 -3.6443 0.0558 13 6 3.0089 -3.9876 1.1503 14 6 3.8888 -5.0301 1.0748 15 6 4.0110 -5.7503 -0.1158 16 6 4.8358 -6.8884 -0.5315 17 7 4.5381 -7.1532 -1.7663 18 8 3.5478 -6.2534 -2.2222 19 6 3.2258 -5.4025 -1.2271 20 6 2.3334 -4.3417 -1.1280 21 1 -0.4851 0.8400 -0.0004 22 1 1.2672 -2.3429 2.2140 23 1 -0.1646 -1.8718 1.5111 24 1 2.9176 -3.4289 2.0700 25 1 4.4905 -5.2942 1.9320 26 1 5.5584 -7.4106 0.0780 27 1 1.7246 -4.0650 -1.9760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291413.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 56.301250 kcal Electronic energy + Delta-G solvation = -13899.558550 eV Core-core repulsion = 11431.562231 eV Total energy + Delta-G solvation = -2467.996320 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.29655 -37.78796 -34.50313 -33.33688 -31.54994 -30.05079 -28.97007 -26.04764 -23.45354 -22.58335 -21.62394 -20.36213 -16.90301 -16.84573 -16.33412 -15.54720 -15.50383 -14.57809 -14.01291 -13.58842 -13.24166 -13.04447 -12.90947 -11.90168 -11.60259 -11.32378 -11.20615 -11.10378 -11.03209 -10.88080 -10.64465 -10.12773 -9.76019 -8.75847 -8.21317 -8.12244 -7.39911 -6.24107 -4.38047 1.07295 1.81962 2.44806 2.85513 3.15571 3.24435 3.28235 4.12590 4.29116 4.46365 4.67312 5.00739 5.04525 5.49488 5.62433 5.76199 5.92526 6.15801 6.37905 6.40834 6.53373 6.83483 6.92908 7.12597 7.54140 7.58034 7.62677 7.92125 8.52252 8.70750 8.88616 9.31893 10.76688 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045943 B = 0.007384 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.309962 B = 3791.069676 C = 3872.380413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.235 3.765 10 H 0.057 0.943 11 N -0.847 5.847 12 C 0.042 3.958 13 C -0.130 4.130 14 C -0.049 4.049 15 C -0.231 4.231 16 C 0.110 3.890 17 N -0.310 5.310 18 O -0.103 6.103 19 C 0.087 3.913 20 C -0.139 4.139 21 H 0.267 0.733 22 H 0.316 0.684 23 H 0.351 0.649 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.203 0.797 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -7.303 3.113 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.125 3.875 10 H 0.075 0.925 11 N -0.375 5.375 12 C 0.039 3.961 13 C -0.149 4.149 14 C -0.069 4.069 15 C -0.235 4.235 16 C -0.090 4.090 17 N -0.053 5.053 18 O -0.113 6.113 19 C 0.033 3.967 20 C -0.159 4.159 21 H 0.077 0.923 22 H 0.126 0.874 23 H 0.165 0.835 24 H 0.149 0.851 25 H 0.143 0.857 26 H 0.219 0.781 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.999 -8.703 1.771 10.718 hybrid contribution 0.746 2.420 0.681 2.622 sum 6.745 -6.284 2.452 9.539 Atomic orbital electron populations 1.69862 1.05898 1.27465 1.49318 1.25007 0.94922 0.99418 0.94028 0.86479 0.80018 0.82832 0.78140 1.20510 1.21026 1.19724 1.21706 0.94308 0.90658 1.52203 0.92299 1.18097 0.90891 0.87996 0.90506 0.92490 1.59482 1.14479 1.58827 1.04755 1.20537 0.92881 0.92356 0.90298 1.20670 0.96736 0.97617 0.99835 1.20332 0.97377 0.94181 0.95037 1.20676 1.03667 1.01571 0.97576 1.25927 0.96329 0.93661 0.93107 1.79712 1.03442 1.09364 1.12774 1.89074 1.49922 1.39120 1.33228 1.20285 0.96080 0.92694 0.87638 1.19917 1.00928 0.94979 1.00115 0.92337 0.87383 0.83519 0.85090 0.85732 0.78062 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.42 12.11 55.43 0.67 -22.75 15 2 C 0.07 1.80 5.35 -17.82 -0.10 1.70 15 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 15 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.55 -13.93 8.61 -34.44 -0.30 -14.23 15 8 H 0.06 1.52 7.75 -52.49 -0.41 1.12 15 9 C 0.23 5.47 2.81 -70.01 -0.20 5.28 15 10 H 0.06 1.47 7.98 -51.93 -0.41 1.05 15 11 N -0.85 -18.45 8.91 -6.64 -0.06 -18.51 15 12 C 0.04 0.85 4.90 -104.58 -0.51 0.34 15 13 C -0.13 -2.31 9.23 -39.96 -0.37 -2.68 15 14 C -0.05 -0.76 10.05 -39.63 -0.40 -1.15 15 15 C -0.23 -3.79 6.35 -105.17 -0.67 -4.45 15 16 C 0.11 1.51 12.32 -15.07 -0.19 1.32 15 17 N -0.31 -5.18 12.81 31.94 0.41 -4.77 15 18 O -0.10 -1.98 12.06 7.67 0.09 -1.88 15 19 C 0.09 1.64 7.48 -38.47 -0.29 1.35 15 20 C -0.14 -2.76 9.68 -39.47 -0.38 -3.15 15 21 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 22 H 0.32 6.44 7.53 -39.29 -0.30 6.14 15 23 H 0.35 8.17 7.77 -39.29 -0.31 7.87 15 24 H 0.13 2.19 6.78 -52.48 -0.36 1.84 15 25 H 0.12 1.43 8.06 -52.48 -0.42 1.01 15 26 H 0.20 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.13 2.56 8.02 -52.49 -0.42 2.14 15 LS Contribution 243.80 15.07 3.67 3.67 Total: -1.00 -27.73 243.80 -5.80 -33.53 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.18 Total: 11.31 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.39 Total: -15.69 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 1.02 Total: -46.04 kcal Atomic # 8 Polarization: -1.98 SS G_CDS: 0.09 Total: -1.88 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.73 -5.80 -33.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291413.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.835 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds