Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46973 * 85.13728 * 3 2 1 5 5 H 1.48507 * 109.46777 * 325.13773 * 3 2 1 6 6 H 1.48496 * 109.47143 * 205.14079 * 3 2 1 7 7 C 1.37880 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99687 * 172.97395 * 7 2 1 9 9 C 1.50696 * 119.99982 * 352.97323 * 7 2 1 10 10 H 1.08999 * 109.47572 * 57.07376 * 9 7 2 11 11 N 1.46906 * 109.47149 * 297.07001 * 9 7 2 12 12 C 1.50709 * 109.47206 * 177.07645 * 9 7 2 13 13 C 1.38780 * 119.70279 * 79.72000 * 12 9 7 14 14 C 1.36626 * 120.51214 * 179.78049 * 13 12 9 15 15 C 1.39678 * 119.79176 * 0.47689 * 14 13 12 16 16 C 1.46577 * 133.73902 * 179.75665 * 15 14 13 17 17 N 1.29743 * 107.41723 * 180.02562 * 16 15 14 18 18 O 1.41360 * 109.74005 * 359.97438 * 17 16 15 19 19 C 1.34826 * 109.32838 * 0.02562 * 18 17 16 20 20 C 1.37802 * 119.69267 * 259.99940 * 12 9 7 21 21 H 0.97004 * 120.00397 * 0.02562 * 1 2 3 22 22 H 1.00901 * 110.99763 * 306.33557 * 11 9 7 23 23 H 1.00900 * 110.99836 * 70.28603 * 11 9 7 24 24 H 1.08004 * 119.74181 * 0.02562 * 13 12 9 25 25 H 1.08007 * 120.10193 * 180.25758 * 14 13 12 26 26 H 1.07998 * 126.28927 * 0.02562 * 16 15 14 27 27 H 1.07992 * 120.10524 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3938 2.1057 1.3951 5 1 1.5017 2.6208 -0.8003 6 1 3.5942 1.4127 -0.5948 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1976 -0.1139 9 6 1.2594 -2.4942 0.1608 10 1 0.5065 -2.5805 -0.6226 11 7 0.6042 -2.5243 1.4753 12 6 2.2277 -3.6443 0.0558 13 6 3.0089 -3.9876 1.1503 14 6 3.8888 -5.0301 1.0748 15 6 4.0110 -5.7503 -0.1158 16 6 4.8358 -6.8884 -0.5315 17 7 4.5381 -7.1532 -1.7663 18 8 3.5478 -6.2534 -2.2222 19 6 3.2258 -5.4025 -1.2271 20 6 2.3334 -4.3417 -1.1280 21 1 -0.4851 0.8400 -0.0004 22 1 1.2672 -2.3429 2.2140 23 1 -0.1646 -1.8718 1.5111 24 1 2.9176 -3.4289 2.0700 25 1 4.4905 -5.2942 1.9320 26 1 5.5584 -7.4106 0.0780 27 1 1.7246 -4.0650 -1.9760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291413.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 37.516307 kcal Electronic energy + Delta-G solvation = -13900.373127 eV Core-core repulsion = 11431.562231 eV Total energy + Delta-G solvation = -2468.810896 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.61017 -39.25971 -36.22479 -34.66591 -33.38992 -31.45264 -30.44051 -27.93445 -25.07704 -23.93221 -22.84168 -21.95051 -18.71363 -18.18091 -17.88595 -17.16424 -16.86183 -16.38348 -15.32973 -15.05907 -14.81604 -14.48706 -14.46246 -13.54676 -13.25859 -12.96159 -12.85553 -12.64076 -12.47890 -12.32540 -12.19568 -11.92591 -11.51016 -10.70950 -9.70068 -9.50075 -9.23257 -8.18148 -6.40393 -0.23527 0.42009 1.21365 1.37782 1.41381 1.49626 1.51336 2.35549 2.77950 3.03293 3.36316 3.43259 3.71865 4.07609 4.33483 4.48570 4.52655 4.68661 4.85841 5.01879 5.15797 5.20392 5.44126 5.62322 5.75719 5.88684 6.00635 6.26047 6.62610 6.78747 7.07474 7.33482 8.79916 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045943 B = 0.007384 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.309962 B = 3791.069676 C = 3872.380413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.560 4.560 8 H 0.051 0.949 9 C 0.239 3.761 10 H 0.017 0.983 11 N -0.836 5.836 12 C 0.020 3.980 13 C -0.143 4.143 14 C -0.022 4.022 15 C -0.231 4.231 16 C 0.145 3.855 17 N -0.329 5.329 18 O -0.140 6.140 19 C 0.066 3.934 20 C -0.161 4.161 21 H 0.268 0.732 22 H 0.327 0.673 23 H 0.341 0.659 24 H 0.142 0.858 25 H 0.179 0.821 26 H 0.265 0.735 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 -8.283 4.976 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.599 4.599 8 H 0.069 0.931 9 C 0.129 3.871 10 H 0.035 0.965 11 N -0.363 5.363 12 C 0.018 3.982 13 C -0.162 4.162 14 C -0.041 4.041 15 C -0.235 4.235 16 C -0.055 4.055 17 N -0.077 5.077 18 O -0.145 6.145 19 C 0.013 3.987 20 C -0.181 4.181 21 H 0.077 0.923 22 H 0.137 0.863 23 H 0.153 0.847 24 H 0.160 0.840 25 H 0.196 0.804 26 H 0.281 0.719 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.399 -9.670 3.625 13.312 hybrid contribution 0.051 2.615 0.114 2.618 sum 8.450 -7.055 3.739 11.626 Atomic orbital electron populations 1.69961 1.07014 1.28141 1.49987 1.25702 0.95632 1.02297 0.93776 0.85539 0.78512 0.79152 0.78383 1.19464 1.21121 1.19911 1.21911 0.93994 0.91930 1.52109 0.93110 1.17847 0.90435 0.88893 0.89901 0.96496 1.59432 1.14229 1.58208 1.04464 1.20313 0.93768 0.92299 0.91794 1.20816 0.97243 0.98968 0.99151 1.20785 0.95691 0.91689 0.95957 1.21099 1.03190 1.02210 0.97000 1.26842 0.95115 0.91565 0.92023 1.79738 1.03687 1.09552 1.14677 1.89057 1.51327 1.39892 1.34254 1.20352 0.96617 0.92655 0.89065 1.19825 1.02063 0.96362 0.99855 0.92266 0.86255 0.84660 0.84049 0.80375 0.71900 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 12.11 21.45 0.26 -48.91 15 2 C 0.03 1.41 5.35 84.66 0.45 1.87 15 3 Si 0.96 41.39 29.54 68.60 2.03 43.42 15 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 7 C -0.56 -29.01 8.61 25.60 0.22 -28.79 15 8 H 0.05 2.66 7.75 -2.91 -0.02 2.64 15 9 C 0.24 11.57 2.81 43.42 0.12 11.70 15 10 H 0.02 0.94 7.98 -2.39 -0.02 0.92 15 11 N -0.84 -37.02 8.91 -174.94 -1.56 -38.58 15 12 C 0.02 0.85 4.90 -19.83 -0.10 0.75 15 13 C -0.14 -4.83 9.23 22.02 0.20 -4.63 15 14 C -0.02 -0.57 10.05 22.24 0.22 -0.35 15 15 C -0.23 -6.83 6.35 -20.22 -0.13 -6.96 15 16 C 0.14 3.28 12.32 87.18 1.07 4.35 15 17 N -0.33 -10.24 12.81 -52.86 -0.68 -10.91 15 18 O -0.14 -5.36 12.06 29.81 0.36 -5.00 15 19 C 0.07 2.50 7.48 22.99 0.17 2.67 15 20 C -0.16 -6.67 9.68 22.34 0.22 -6.45 15 21 H 0.27 13.76 8.31 -92.70 -0.77 12.99 15 22 H 0.33 13.19 7.53 -89.69 -0.68 12.52 15 23 H 0.34 16.28 7.77 -89.69 -0.70 15.58 15 24 H 0.14 4.41 6.78 -2.91 -0.02 4.39 15 25 H 0.18 2.83 8.06 -2.91 -0.02 2.80 15 26 H 0.27 2.36 8.06 -2.91 -0.02 2.33 15 27 H 0.12 4.99 8.02 -2.91 -0.02 4.96 15 Total: -1.00 -62.55 243.80 2.71 -59.83 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.15 Total: 25.99 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 2.46 Total: -25.84 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -1.98 Total: -98.40 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: 0.36 Total: -5.00 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.55 2.71 -59.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291413.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.349 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds