Wall clock time and date at job start Mon Mar 30 2020 02:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46820 * 239.99750 * 3 2 1 5 5 H 1.48497 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47006 * 119.99716 * 3 2 1 7 7 C 1.37878 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99858 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47349 * 179.97438 * 9 7 2 11 11 C 1.34004 * 124.92217 * 90.62852 * 10 9 7 12 12 C 1.46786 * 106.19235 * 180.02562 * 11 10 9 13 13 C 1.39436 * 134.28247 * 179.31893 * 12 11 10 14 14 C 1.38168 * 119.55769 * 179.97438 * 13 12 11 15 15 O 1.35973 * 119.92213 * 180.02562 * 14 13 12 16 16 C 1.39192 * 120.15391 * 359.97438 * 14 13 12 17 17 C 1.37778 * 120.64062 * 0.02562 * 16 14 13 18 18 C 1.38921 * 120.03495 * 0.23789 * 17 16 14 19 19 O 1.34426 * 124.92324 * 269.97825 * 10 9 7 20 20 H 0.96999 * 119.99742 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46720 * 60.00292 * 9 7 2 22 22 H 1.08995 * 109.46990 * 300.00364 * 9 7 2 23 23 H 1.08004 * 126.89809 * 359.33322 * 11 10 9 24 24 H 1.08002 * 120.21660 * 0.02562 * 13 12 11 25 25 H 0.96707 * 113.99743 * 269.97443 * 15 14 13 26 26 H 1.07999 * 119.67650 * 180.02562 * 16 14 13 27 27 H 1.08002 * 119.97971 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.7196 -4.2356 1.0992 12 6 3.6273 -5.2884 0.6279 13 6 4.4387 -6.2294 1.2607 14 6 5.1910 -7.1029 0.4990 15 8 5.9844 -8.0238 1.1084 16 6 5.1379 -7.0429 -0.8906 17 6 4.3387 -6.1160 -1.5234 18 6 3.5793 -5.2259 -0.7744 19 8 2.7300 -4.2299 -1.1016 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6240 -2.5567 0.8902 23 1 2.4997 -3.9802 2.1254 24 1 4.4781 -6.2757 2.3390 25 1 6.8834 -7.7137 1.2842 26 1 5.7288 -7.7296 -1.4784 27 1 4.3059 -6.0787 -2.6023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261292271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:35 Heat of formation + Delta-G solvation = -26.857911 kcal Electronic energy + Delta-G solvation = -13580.039991 eV Core-core repulsion = 11076.144868 eV Total energy + Delta-G solvation = -2503.895123 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.87631 -38.76768 -35.76508 -33.65853 -32.26983 -30.33181 -29.11052 -27.01300 -23.73131 -22.36363 -21.41219 -20.36382 -18.22111 -17.01123 -16.62843 -15.70042 -15.46189 -15.14223 -14.60065 -13.93818 -13.75727 -12.92066 -12.49552 -12.38177 -12.16398 -11.68720 -11.45056 -11.34013 -10.90571 -10.75651 -10.31915 -9.99980 -9.82462 -9.46086 -8.57719 -8.09362 -7.57566 -6.19782 -4.25783 1.22558 1.49252 3.03254 3.25876 3.29952 3.31333 3.35494 3.80637 4.28015 4.33715 4.89409 5.05740 5.15837 5.34840 5.50167 5.62534 5.89882 6.05617 6.22486 6.38756 6.53386 6.66942 6.69647 6.97976 7.16773 7.26901 7.68914 7.74206 7.90833 8.03949 8.76502 9.38908 10.89791 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.055472 B = 0.006083 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.638673 B = 4602.221189 C = 4653.178417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.079 3.921 10 C 0.110 3.890 11 C -0.257 4.257 12 C -0.098 4.098 13 C -0.108 4.108 14 C 0.079 3.921 15 O -0.499 6.499 16 C -0.137 4.137 17 C -0.087 4.087 18 C 0.029 3.971 19 O -0.191 6.191 20 H 0.267 0.733 21 H 0.043 0.957 22 H 0.060 0.940 23 H 0.154 0.846 24 H 0.128 0.872 25 H 0.384 0.616 26 H 0.134 0.866 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 -10.484 0.322 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.043 3.957 10 C 0.062 3.938 11 C -0.276 4.276 12 C -0.099 4.099 13 C -0.127 4.127 14 C 0.034 3.966 15 O -0.308 6.308 16 C -0.156 4.156 17 C -0.105 4.105 18 C -0.018 4.018 19 O -0.092 6.092 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.171 0.829 24 H 0.146 0.854 25 H 0.239 0.761 26 H 0.151 0.849 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.165 -10.645 0.019 13.416 hybrid contribution 0.929 1.146 0.230 1.493 sum 9.094 -9.499 0.249 13.153 Atomic orbital electron populations 1.69923 1.06067 1.27493 1.49409 1.24979 0.94973 0.99446 0.94611 0.86462 0.79471 0.82116 0.78904 1.19995 1.21016 1.19960 1.20918 0.93274 0.89269 1.52679 0.92089 1.18237 0.90906 0.86423 1.00144 1.23829 0.94585 0.93143 0.82209 1.22085 1.05081 1.00581 0.99861 1.19902 0.99145 0.97780 0.93050 1.20660 0.97804 0.94192 1.00027 1.18096 0.96553 0.91726 0.90190 1.84855 1.26347 1.39114 1.80483 1.20940 1.01374 0.99535 0.93722 1.19702 0.96880 0.94384 0.99560 1.19718 0.95989 0.92566 0.93551 1.84095 1.49738 1.39991 1.35417 0.92379 0.93870 0.92260 0.82873 0.85392 0.76112 0.84862 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.67 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 7 C -0.52 -14.39 9.09 -34.44 -0.31 -14.71 15 8 H 0.06 1.67 7.74 -52.48 -0.41 1.27 15 9 C 0.08 2.01 5.48 -29.03 -0.16 1.85 15 10 C 0.11 2.50 6.42 -35.80 -0.23 2.27 15 11 C -0.26 -5.26 11.01 -37.62 -0.41 -5.68 15 12 C -0.10 -1.84 6.39 -105.16 -0.67 -2.52 15 13 C -0.11 -1.73 10.03 -39.16 -0.39 -2.12 15 14 C 0.08 1.12 6.70 -39.25 -0.26 0.86 15 15 O -0.50 -5.94 13.50 -19.66 -0.27 -6.21 15 16 C -0.14 -1.86 9.95 -39.40 -0.39 -2.25 15 17 C -0.09 -1.33 10.05 -39.50 -0.40 -1.73 15 18 C 0.03 0.56 7.41 -38.49 -0.29 0.28 15 19 O -0.19 -4.21 10.59 3.64 0.04 -4.17 15 20 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 22 H 0.06 1.51 8.14 -51.93 -0.42 1.08 15 23 H 0.15 2.86 8.06 -52.48 -0.42 2.44 15 24 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.38 2.64 9.06 45.56 0.41 3.06 15 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.13 1.69 8.06 -52.49 -0.42 1.26 15 LS Contribution 249.85 15.07 3.77 3.77 Total: -1.00 -30.28 249.85 -6.03 -36.30 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -1.66 Total: 1.10 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.62 Total: -22.12 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.74 Total: -24.67 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.23 Total: -10.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.28 -6.03 -36.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.444 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds