Wall clock time and date at job start Mon Mar 30 2020 02:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46820 * 239.99750 * 3 2 1 5 5 H 1.48497 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47006 * 119.99716 * 3 2 1 7 7 C 1.37878 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99858 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47349 * 179.97438 * 9 7 2 11 11 C 1.34004 * 124.92217 * 90.62852 * 10 9 7 12 12 C 1.46786 * 106.19235 * 180.02562 * 11 10 9 13 13 C 1.39436 * 134.28247 * 179.31893 * 12 11 10 14 14 C 1.38168 * 119.55769 * 179.97438 * 13 12 11 15 15 O 1.35973 * 119.92213 * 180.02562 * 14 13 12 16 16 C 1.39192 * 120.15391 * 359.97438 * 14 13 12 17 17 C 1.37778 * 120.64062 * 0.02562 * 16 14 13 18 18 C 1.38921 * 120.03495 * 0.23789 * 17 16 14 19 19 O 1.34426 * 124.92324 * 269.97825 * 10 9 7 20 20 H 0.96999 * 119.99742 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46720 * 60.00292 * 9 7 2 22 22 H 1.08995 * 109.46990 * 300.00364 * 9 7 2 23 23 H 1.08004 * 126.89809 * 359.33322 * 11 10 9 24 24 H 1.08002 * 120.21660 * 0.02562 * 13 12 11 25 25 H 0.96707 * 113.99743 * 269.97443 * 15 14 13 26 26 H 1.07999 * 119.67650 * 180.02562 * 16 14 13 27 27 H 1.08002 * 119.97971 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.7196 -4.2356 1.0992 12 6 3.6273 -5.2884 0.6279 13 6 4.4387 -6.2294 1.2607 14 6 5.1910 -7.1029 0.4990 15 8 5.9844 -8.0238 1.1084 16 6 5.1379 -7.0429 -0.8906 17 6 4.3387 -6.1160 -1.5234 18 6 3.5793 -5.2259 -0.7744 19 8 2.7300 -4.2299 -1.1016 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6240 -2.5567 0.8902 23 1 2.4997 -3.9802 2.1254 24 1 4.4781 -6.2757 2.3390 25 1 6.8834 -7.7137 1.2842 26 1 5.7288 -7.7296 -1.4784 27 1 4.3059 -6.0787 -2.6023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:35 Heat of formation + Delta-G solvation = -46.878837 kcal Electronic energy + Delta-G solvation = -13580.908164 eV Core-core repulsion = 11076.144868 eV Total energy + Delta-G solvation = -2504.763295 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.36078 -39.90524 -36.92571 -35.63467 -33.86945 -32.00209 -30.39326 -28.68838 -25.58103 -23.69910 -22.78193 -21.93198 -19.34169 -18.71542 -18.35355 -17.20635 -16.99167 -16.42184 -16.25271 -15.18943 -15.13349 -14.40913 -14.26017 -14.02468 -13.71643 -13.42927 -12.80592 -12.73522 -12.67190 -12.52343 -11.98485 -11.76557 -11.39442 -10.99541 -10.68027 -9.36568 -9.08180 -8.28352 -6.44064 -0.06040 0.24477 1.37982 1.42770 1.46966 1.53647 1.84805 2.38103 2.58203 3.03367 3.17976 3.61187 3.77664 4.11719 4.28579 4.38953 4.44894 4.69644 4.88831 5.01640 5.10505 5.18442 5.29129 5.34302 5.50768 5.61094 5.65900 5.97519 6.30058 6.63481 6.87875 7.24911 8.80414 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.055472 B = 0.006083 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.638673 B = 4602.221189 C = 4653.178417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.088 3.912 10 C 0.071 3.929 11 C -0.246 4.246 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.095 3.905 15 O -0.499 6.499 16 C -0.117 4.117 17 C -0.090 4.090 18 C 0.000 4.000 19 O -0.214 6.214 20 H 0.271 0.729 21 H 0.018 0.982 22 H 0.047 0.953 23 H 0.163 0.837 24 H 0.144 0.856 25 H 0.411 0.589 26 H 0.174 0.826 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.423 -11.800 0.406 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.052 3.948 10 C 0.023 3.977 11 C -0.265 4.265 12 C -0.121 4.121 13 C -0.134 4.134 14 C 0.050 3.950 15 O -0.312 6.312 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.046 4.046 19 O -0.116 6.116 20 H 0.080 0.920 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.181 0.819 24 H 0.162 0.838 25 H 0.270 0.730 26 H 0.192 0.808 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.716 -11.977 0.114 16.072 hybrid contribution 0.288 1.315 0.226 1.365 sum 11.005 -10.662 0.340 15.326 Atomic orbital electron populations 1.70032 1.07559 1.28623 1.49969 1.25885 0.95863 1.03073 0.93876 0.85398 0.78290 0.77580 0.79208 1.19480 1.20061 1.19007 1.21213 0.93208 0.90714 1.53024 0.92674 1.17878 0.91181 0.87467 0.98310 1.23267 0.96594 0.94350 0.83448 1.22303 1.04252 1.00274 0.99629 1.19985 1.00286 0.98676 0.93190 1.20898 0.97456 0.93888 1.01156 1.18164 0.95787 0.90554 0.90494 1.84801 1.27947 1.38294 1.80144 1.21411 0.99804 0.98522 0.93795 1.20136 0.96132 0.93687 1.00867 1.20336 0.96710 0.92977 0.94602 1.83988 1.50974 1.41300 1.35351 0.92027 0.96360 0.93453 0.81930 0.83800 0.72959 0.80825 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.29 21.45 0.28 -53.79 15 2 C 0.01 0.71 5.46 84.66 0.46 1.17 15 3 Si 0.97 43.46 29.54 68.60 2.03 45.48 15 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 7 C -0.54 -31.08 9.09 25.60 0.23 -30.85 15 8 H 0.05 3.13 7.74 -2.91 -0.02 3.11 15 9 C 0.09 4.76 5.48 29.10 0.16 4.92 15 10 C 0.07 3.39 6.42 24.72 0.16 3.55 15 11 C -0.25 -10.35 11.01 23.54 0.26 -10.09 15 12 C -0.12 -4.49 6.39 -20.21 -0.13 -4.62 15 13 C -0.12 -3.41 10.03 22.54 0.23 -3.18 15 14 C 0.09 2.32 6.70 22.48 0.15 2.47 15 15 O -0.50 -9.42 13.50 -93.25 -1.26 -10.67 15 16 C -0.12 -2.66 9.95 22.39 0.22 -2.43 15 17 C -0.09 -2.54 10.05 22.32 0.22 -2.31 15 18 C 0.00 0.01 7.41 22.97 0.17 0.18 15 19 O -0.21 -9.82 10.59 -9.88 -0.10 -9.92 15 20 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 21 H 0.02 1.03 8.14 -2.38 -0.02 1.02 15 22 H 0.05 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.16 6.25 8.06 -2.91 -0.02 6.22 15 24 H 0.14 3.68 8.06 -2.91 -0.02 3.66 15 25 H 0.41 3.47 9.06 -74.05 -0.67 2.80 15 26 H 0.17 2.58 8.06 -2.91 -0.02 2.56 15 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -67.13 249.85 3.61 -63.52 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.52 Total: 6.59 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 2.14 Total: -41.21 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.28 Total: -53.79 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.36 Total: -20.59 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.13 3.61 -63.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.638 kcal (2) G-P(sol) polarization free energy of solvation -67.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds