Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37649 * 119.93431 * 2 1 4 4 C 1.38113 * 121.09361 * 179.71650 * 3 2 1 5 5 C 1.39649 * 121.43920 * 0.56416 * 4 3 2 6 6 S 1.76069 * 130.61452 * 179.72372 * 5 4 3 7 7 C 1.75509 * 91.51126 * 180.02562 * 6 5 4 8 8 C 1.32727 * 110.67171 * 359.97438 * 7 6 5 9 9 C 1.39727 * 120.07270 * 359.72468 * 5 4 3 10 10 C 1.40323 * 119.93153 * 180.27357 * 2 1 3 11 11 C 1.40589 * 120.40340 * 0.02562 * 10 2 1 12 12 H 1.08001 * 119.99458 * 315.88569 * 11 10 2 13 13 C 1.39994 * 119.99933 * 135.88357 * 11 10 2 14 14 N 1.30833 * 119.99744 * 154.86375 * 13 11 10 15 15 Si 1.86804 * 120.00177 * 334.86644 * 13 11 10 16 16 H 1.48495 * 109.46924 * 94.91984 * 15 13 11 17 17 H 1.48506 * 109.46853 * 214.91932 * 15 13 11 18 18 H 1.48496 * 109.47031 * 334.91543 * 15 13 11 19 19 H 1.09003 * 109.47599 * 264.32325 * 1 2 3 20 20 H 1.09004 * 109.47019 * 144.32358 * 1 2 3 21 21 H 1.08999 * 109.46960 * 24.32254 * 1 2 3 22 22 H 1.08005 * 119.44929 * 359.97438 * 3 2 1 23 23 H 1.07997 * 119.28170 * 180.31194 * 4 3 2 24 24 H 1.08001 * 124.66286 * 179.97438 * 7 6 5 25 25 H 1.07991 * 122.09268 * 180.02562 * 8 7 6 26 26 H 0.97004 * 119.99578 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1929 0.0000 4 6 3.5747 1.2208 0.0059 5 6 4.3271 0.0444 0.0003 6 16 6.0706 -0.2011 -0.0009 7 6 5.8718 -1.9449 -0.0100 8 6 4.5849 -2.2698 -0.0113 9 6 3.6857 -1.1970 -0.0057 10 6 2.2072 -1.2161 -0.0058 11 6 1.5113 -2.4377 -0.0122 12 1 0.6603 -2.5777 0.6379 13 6 1.9216 -3.4724 -0.8612 14 7 1.6445 -4.7149 -0.5593 15 14 2.8646 -3.0792 -2.4250 16 1 4.3224 -3.1901 -2.1650 17 1 2.4775 -4.0381 -3.4908 18 1 2.5434 -1.6969 -2.8624 19 1 -0.3634 -0.1017 1.0226 20 1 -0.3633 -0.8348 -0.5994 21 1 -0.3633 0.9364 -0.4233 22 1 1.6438 2.1223 -0.0004 23 1 4.0837 2.1733 0.0108 24 1 6.6849 -2.6558 -0.0140 25 1 4.2526 -3.2973 -0.0161 26 1 1.9284 -5.4319 -1.1478 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261300542.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = 29.752429 kcal Electronic energy + Delta-G solvation = -12309.518627 eV Core-core repulsion = 10250.831184 eV Total energy + Delta-G solvation = -2058.687443 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.38854 -34.64888 -33.80961 -31.16233 -29.21114 -26.22093 -24.71235 -22.46436 -20.74012 -18.70811 -18.01979 -16.15998 -15.36133 -14.66984 -13.93127 -13.69510 -13.27311 -12.95372 -12.64846 -12.15141 -11.94417 -11.40075 -11.31548 -11.16801 -10.94226 -10.57501 -10.25602 -10.01014 -9.76069 -9.54025 -9.28401 -8.17297 -7.37047 -7.15183 -6.76867 -4.57414 1.74314 2.39384 2.54296 2.92512 3.09295 3.11397 3.24141 3.44298 3.91820 4.30643 5.10093 5.71350 5.90349 6.05307 6.18529 6.29906 6.49871 6.57320 6.64402 6.79234 6.85404 6.97675 7.04897 7.24337 7.52179 7.54776 7.72303 7.97019 8.13297 8.47062 8.61796 9.85571 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.017599 C = 0.011644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.434018 B = 1590.629169 C = 2404.044956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.198 4.198 3 C -0.051 4.051 4 C -0.214 4.214 5 C -0.074 4.074 6 S -0.001 6.001 7 C -0.265 4.265 8 C -0.063 4.063 9 C -0.174 4.174 10 C 0.134 3.866 11 C -0.441 4.441 12 H 0.101 0.899 13 C 0.095 3.905 14 N -0.789 5.789 15 Si 0.881 3.119 16 H -0.245 1.245 17 H -0.282 1.282 18 H -0.248 1.248 19 H 0.046 0.954 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.148 0.852 25 H 0.131 0.869 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 4.150 -1.244 5.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C -0.072 4.072 4 C -0.239 4.239 5 C -0.189 4.189 6 S 0.260 5.740 7 C -0.398 4.398 8 C -0.092 4.092 9 C -0.180 4.180 10 C 0.129 3.871 11 C -0.468 4.468 12 H 0.119 0.881 13 C -0.127 4.127 14 N -0.412 5.412 15 Si 0.704 3.296 16 H -0.170 1.170 17 H -0.208 1.208 18 H -0.171 1.171 19 H 0.065 0.935 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.120 0.880 23 H 0.115 0.885 24 H 0.166 0.834 25 H 0.149 0.851 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.967 4.690 -1.261 6.270 hybrid contribution -0.670 -1.009 -0.660 1.379 sum 3.297 3.681 -1.921 5.302 Atomic orbital electron populations 1.20382 0.92407 1.00614 1.00492 1.19653 0.94972 0.92292 1.13190 1.20361 0.92974 0.96500 0.97365 1.19600 0.93155 0.94173 1.17000 1.22338 0.94207 0.97476 1.04891 1.83450 1.05228 1.03615 1.81729 1.24569 0.99598 0.96613 1.19002 1.19867 0.91829 0.99854 0.97682 1.19286 0.94374 0.90539 1.13832 1.18366 0.87850 0.92868 0.88062 1.19280 1.13401 0.94215 1.19951 0.88090 1.26126 0.93018 0.93732 0.99792 1.69784 1.35593 1.00364 1.35427 0.86773 0.81729 0.80736 0.80371 1.16959 1.20826 1.17091 0.93529 0.91743 0.94008 0.88032 0.88475 0.83428 0.85101 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.42 36.01 0.34 -1.25 15 2 C -0.20 -4.45 5.92 -104.05 -0.62 -5.07 15 3 C -0.05 -1.07 9.58 -39.84 -0.38 -1.45 15 4 C -0.21 -4.60 10.02 -39.10 -0.39 -4.99 15 5 C -0.07 -1.71 6.49 -38.50 -0.25 -1.96 15 6 S 0.00 -0.01 23.30 -107.50 -2.50 -2.52 15 7 C -0.26 -5.49 11.11 28.85 0.32 -5.17 15 8 C -0.06 -1.46 6.61 -40.81 -0.27 -1.73 15 9 C -0.17 -4.26 4.76 -104.75 -0.50 -4.76 15 10 C 0.13 3.32 4.74 -104.29 -0.49 2.83 15 11 C -0.44 -11.29 8.00 -38.04 -0.30 -11.60 15 12 H 0.10 2.67 7.90 -52.49 -0.41 2.26 15 13 C 0.09 2.36 4.27 -17.32 -0.07 2.29 15 14 N -0.79 -19.81 13.93 55.55 0.77 -19.04 15 15 Si 0.88 20.07 24.73 -169.99 -4.20 15.87 15 16 H -0.25 -5.50 5.82 56.52 0.33 -5.17 15 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 18 H -0.25 -5.96 7.11 56.52 0.40 -5.56 15 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.06 1.29 7.31 -51.93 -0.38 0.91 15 21 H 0.04 0.69 8.03 -51.93 -0.42 0.27 15 22 H 0.10 1.78 8.05 -52.48 -0.42 1.36 15 23 H 0.10 1.85 8.06 -52.49 -0.42 1.43 15 24 H 0.15 2.61 8.06 -52.49 -0.42 2.19 15 25 H 0.13 3.08 6.05 -52.49 -0.32 2.76 15 26 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 LS Contribution 232.79 15.07 3.51 3.51 Total: -1.00 -26.20 232.79 -7.47 -33.68 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.43 Total: 1.36 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: -2.62 Total: -32.86 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.77 Total: -19.04 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.20 Total: 15.87 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.50 Total: -2.52 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.20 -7.47 -33.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300542.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.428 kcal (2) G-P(sol) polarization free energy of solvation -26.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds