Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37649 * 119.93431 * 2 1 4 4 C 1.38113 * 121.09361 * 179.71650 * 3 2 1 5 5 C 1.39649 * 121.43920 * 0.56416 * 4 3 2 6 6 S 1.76069 * 130.61452 * 179.72372 * 5 4 3 7 7 C 1.75509 * 91.51126 * 180.02562 * 6 5 4 8 8 C 1.32727 * 110.67171 * 359.97438 * 7 6 5 9 9 C 1.39727 * 120.07270 * 359.72468 * 5 4 3 10 10 C 1.40323 * 119.93153 * 180.27357 * 2 1 3 11 11 C 1.40589 * 120.40340 * 0.02562 * 10 2 1 12 12 H 1.08001 * 119.99458 * 315.88569 * 11 10 2 13 13 C 1.39994 * 119.99933 * 135.88357 * 11 10 2 14 14 N 1.30833 * 119.99744 * 154.86375 * 13 11 10 15 15 Si 1.86804 * 120.00177 * 334.86644 * 13 11 10 16 16 H 1.48495 * 109.46924 * 94.91984 * 15 13 11 17 17 H 1.48506 * 109.46853 * 214.91932 * 15 13 11 18 18 H 1.48496 * 109.47031 * 334.91543 * 15 13 11 19 19 H 1.09003 * 109.47599 * 264.32325 * 1 2 3 20 20 H 1.09004 * 109.47019 * 144.32358 * 1 2 3 21 21 H 1.08999 * 109.46960 * 24.32254 * 1 2 3 22 22 H 1.08005 * 119.44929 * 359.97438 * 3 2 1 23 23 H 1.07997 * 119.28170 * 180.31194 * 4 3 2 24 24 H 1.08001 * 124.66286 * 179.97438 * 7 6 5 25 25 H 1.07991 * 122.09268 * 180.02562 * 8 7 6 26 26 H 0.97004 * 119.99578 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1929 0.0000 4 6 3.5747 1.2208 0.0059 5 6 4.3271 0.0444 0.0003 6 16 6.0706 -0.2011 -0.0009 7 6 5.8718 -1.9449 -0.0100 8 6 4.5849 -2.2698 -0.0113 9 6 3.6857 -1.1970 -0.0057 10 6 2.2072 -1.2161 -0.0058 11 6 1.5113 -2.4377 -0.0122 12 1 0.6603 -2.5777 0.6379 13 6 1.9216 -3.4724 -0.8612 14 7 1.6445 -4.7149 -0.5593 15 14 2.8646 -3.0792 -2.4250 16 1 4.3224 -3.1901 -2.1650 17 1 2.4775 -4.0381 -3.4908 18 1 2.5434 -1.6969 -2.8624 19 1 -0.3634 -0.1017 1.0226 20 1 -0.3633 -0.8348 -0.5994 21 1 -0.3633 0.9364 -0.4233 22 1 1.6438 2.1223 -0.0004 23 1 4.0837 2.1733 0.0108 24 1 6.6849 -2.6558 -0.0140 25 1 4.2526 -3.2973 -0.0161 26 1 1.9284 -5.4319 -1.1478 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261300542.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = 16.046656 kcal Electronic energy + Delta-G solvation = -12310.112954 eV Core-core repulsion = 10250.831184 eV Total energy + Delta-G solvation = -2059.281770 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11637 -36.35162 -35.61845 -32.88031 -30.93666 -27.89567 -26.47239 -24.16787 -22.47093 -20.42892 -19.81838 -17.89447 -17.10464 -16.43123 -15.64816 -15.32143 -15.04898 -14.67082 -14.37291 -13.78499 -13.69071 -13.12338 -12.98638 -12.91324 -12.61664 -12.25309 -12.01980 -11.71605 -11.44277 -11.25993 -11.10422 -9.91370 -9.07251 -8.98508 -8.46187 -6.43916 0.01601 0.62345 0.88086 1.21753 1.26061 1.31024 1.40097 1.70272 2.09719 2.49124 3.30204 4.08607 4.30735 4.39189 4.57330 4.71151 4.81861 4.97569 5.04237 5.11110 5.18095 5.26547 5.40163 5.53687 5.73735 5.83580 5.98208 6.20534 6.28048 6.66405 6.79927 8.08180 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.017599 C = 0.011644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.434018 B = 1590.629169 C = 2404.044956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.210 4.210 3 C -0.055 4.055 4 C -0.204 4.204 5 C -0.113 4.113 6 S 0.059 5.941 7 C -0.249 4.249 8 C -0.097 4.097 9 C -0.189 4.189 10 C 0.107 3.893 11 C -0.472 4.472 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.826 5.826 15 Si 0.921 3.079 16 H -0.239 1.239 17 H -0.268 1.268 18 H -0.269 1.269 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.073 0.927 22 H 0.141 0.859 23 H 0.127 0.873 24 H 0.181 0.819 25 H 0.119 0.881 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 6.204 -1.646 7.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.213 4.213 3 C -0.075 4.075 4 C -0.229 4.229 5 C -0.228 4.228 6 S 0.320 5.680 7 C -0.382 4.382 8 C -0.127 4.127 9 C -0.196 4.196 10 C 0.102 3.898 11 C -0.500 4.500 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.451 5.451 15 Si 0.743 3.257 16 H -0.163 1.163 17 H -0.193 1.193 18 H -0.193 1.193 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.092 0.908 22 H 0.159 0.841 23 H 0.145 0.855 24 H 0.198 0.802 25 H 0.137 0.863 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.601 6.747 -1.661 8.925 hybrid contribution -1.032 -1.426 -0.454 1.818 sum 4.569 5.321 -2.115 7.326 Atomic orbital electron populations 1.20384 0.90667 1.01636 1.00860 1.20145 0.96653 0.92361 1.12179 1.20797 0.93206 0.97390 0.96150 1.20107 0.93658 0.94940 1.14198 1.22788 0.96545 0.97529 1.05963 1.83195 1.02228 1.01988 1.80547 1.25112 0.99581 0.98373 1.15104 1.19888 0.92846 0.99309 1.00633 1.19567 0.94568 0.91795 1.13675 1.18644 0.88610 0.93442 0.89056 1.19140 1.13712 0.95722 1.21458 0.90846 1.26470 0.93447 0.93497 1.00909 1.69789 1.37824 1.00898 1.36626 0.86194 0.81320 0.79414 0.78754 1.16339 1.19328 1.19331 0.92922 0.93352 0.90786 0.84094 0.85516 0.80214 0.86347 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.98 9.42 71.24 0.67 -2.31 15 2 C -0.21 -9.28 5.92 -19.50 -0.12 -9.40 15 3 C -0.05 -2.12 9.58 22.10 0.21 -1.91 15 4 C -0.20 -8.09 10.02 22.58 0.23 -7.86 15 5 C -0.11 -4.95 6.49 22.97 0.15 -4.80 15 6 S 0.06 2.17 23.30 -56.49 -1.32 0.85 15 7 C -0.25 -9.63 11.11 66.65 0.74 -8.89 15 8 C -0.10 -4.44 6.61 21.52 0.14 -4.30 15 9 C -0.19 -9.18 4.76 -19.95 -0.09 -9.27 15 10 C 0.11 5.40 4.74 -19.65 -0.09 5.30 15 11 C -0.47 -25.26 8.00 23.27 0.19 -25.08 15 12 H 0.07 4.17 7.90 -2.91 -0.02 4.15 15 13 C 0.07 3.85 4.27 85.27 0.36 4.22 15 14 N -0.83 -43.17 13.93 21.84 0.30 -42.86 15 15 Si 0.92 41.91 24.73 68.60 1.70 43.60 15 16 H -0.24 -10.51 5.82 99.48 0.58 -9.93 15 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 18 H -0.27 -12.99 7.11 99.48 0.71 -12.28 15 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.05 1.96 7.31 -2.38 -0.02 1.95 15 21 H 0.07 2.27 8.03 -2.39 -0.02 2.25 15 22 H 0.14 4.29 8.05 -2.91 -0.02 4.26 15 23 H 0.13 4.21 8.06 -2.91 -0.02 4.19 15 24 H 0.18 5.66 8.06 -2.91 -0.02 5.64 15 25 H 0.12 5.66 6.05 -2.92 -0.02 5.64 15 26 H 0.29 13.89 8.30 -92.70 -0.77 13.12 15 Total: -1.00 -56.60 232.79 4.13 -52.47 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.06 Total: 10.23 kcal Atomic # 6 Polarization: -66.69 SS G_CDS: 2.39 Total: -64.30 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.30 Total: -42.86 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.70 Total: 43.60 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.32 Total: 0.85 kcal Total: -56.60 4.13 -52.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300542.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.515 kcal (2) G-P(sol) polarization free energy of solvation -56.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds