Wall clock time and date at job start Mon Mar 30 2020 02:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21328 * 119.99791 * 2 1 4 4 S 1.71193 * 120.00317 * 179.97438 * 2 1 3 5 5 C 1.81000 * 100.00392 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47251 * 179.97438 * 5 4 2 7 7 C 1.50693 * 115.55042 * 320.10262 * 6 5 4 8 8 H 1.08008 * 119.99674 * 95.20286 * 7 6 5 9 9 C 1.37878 * 120.00216 * 275.20168 * 7 6 5 10 10 N 1.31504 * 119.99906 * 5.11911 * 9 7 6 11 11 Si 1.86807 * 119.99679 * 185.12109 * 9 7 6 12 12 H 1.48495 * 109.47014 * 90.00482 * 11 9 7 13 13 H 1.48500 * 109.46579 * 209.99908 * 11 9 7 14 14 H 1.48499 * 109.47161 * 330.00073 * 11 9 7 15 15 C 1.53005 * 117.49628 * 174.43662 * 6 5 4 16 16 C 1.52998 * 117.49542 * 105.81386 * 6 5 4 17 17 H 1.09004 * 117.49701 * 214.97384 * 16 6 5 18 18 F 1.39901 * 117.50368 * 0.02562 * 16 6 5 19 19 H 1.09003 * 109.46839 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46864 * 240.00180 * 1 2 3 21 21 H 1.08999 * 109.46907 * 120.00018 * 1 2 3 22 22 H 1.09004 * 109.46830 * 299.99988 * 5 4 2 23 23 H 1.09002 * 109.47354 * 59.99728 * 5 4 2 24 24 H 0.97009 * 120.00214 * 174.99794 * 10 9 7 25 25 H 1.09001 * 117.50170 * 359.97438 * 15 6 5 26 26 H 1.08995 * 117.49810 * 145.02280 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0508 0.0000 4 16 2.3631 -1.4825 0.0007 5 6 4.0639 -0.8635 0.0012 6 6 5.0365 -2.0445 0.0025 7 6 4.6441 -3.2088 0.8751 8 1 4.1129 -4.0475 0.4496 9 6 4.9630 -3.2033 2.2164 10 7 5.5193 -2.1407 2.7557 11 14 4.6049 -4.7054 3.2677 12 1 5.7783 -5.6153 3.2468 13 1 4.3340 -4.2790 4.6641 14 1 3.4179 -5.4159 2.7278 15 6 6.5284 -1.7312 -0.1285 16 6 5.7718 -2.3555 -1.3027 17 1 5.9717 -3.4026 -1.5306 18 9 5.5037 -1.5379 -2.4059 19 1 -0.3633 1.0277 -0.0005 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 -0.5138 -0.8900 22 1 4.2299 -0.2566 -0.8889 23 1 4.2293 -0.2561 0.8911 24 1 5.6773 -2.1086 3.7123 25 1 6.8169 -0.6837 -0.2160 26 1 7.2260 -2.3675 0.4161 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261508241.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:06 Heat of formation + Delta-G solvation = -85.589038 kcal Electronic energy + Delta-G solvation = -12741.126315 eV Core-core repulsion = 10246.668066 eV Total energy + Delta-G solvation = -2494.458249 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 218.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.43058 -40.00500 -38.10413 -33.95860 -31.37682 -29.65316 -27.45944 -23.65273 -23.07131 -21.16729 -18.69466 -18.04709 -17.06334 -16.77790 -16.29084 -16.23615 -15.87393 -15.60253 -15.48590 -14.38562 -14.06235 -13.51760 -13.28786 -13.11304 -13.01225 -12.80834 -12.70392 -12.28357 -12.13820 -11.61436 -10.80879 -10.42360 -10.36329 -10.09348 -9.20722 -8.14793 -6.29210 0.55738 0.66438 1.41942 1.47824 1.50161 1.59177 2.42996 3.03367 3.11484 3.56623 3.72487 4.00687 4.25748 4.38650 4.45062 4.48256 4.58956 4.71494 4.99426 5.01921 5.26345 5.48390 5.73789 6.13510 6.19314 6.75283 7.40789 8.92844 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.013013 C = 0.009543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.598830 B = 2151.202605 C = 2933.517019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.295 3.705 3 O -0.515 6.515 4 S -0.082 6.082 5 C -0.046 4.046 6 C 0.023 3.977 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.038 3.962 10 N -0.903 5.903 11 Si 0.953 3.047 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.262 1.262 15 C -0.158 4.158 16 C -0.004 4.004 17 H 0.141 0.859 18 F -0.206 7.206 19 H 0.095 0.905 20 H 0.114 0.886 21 H 0.120 0.880 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.263 0.737 25 H 0.077 0.923 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -1.105 -3.891 7.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 O -0.403 6.403 4 S 0.156 5.844 5 C -0.195 4.195 6 C 0.022 3.978 7 C -0.541 4.541 8 H 0.088 0.912 9 C -0.164 4.164 10 N -0.540 5.540 11 Si 0.778 3.222 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.186 1.186 15 C -0.198 4.198 16 C -0.040 4.040 17 H 0.158 0.842 18 F -0.187 7.187 19 H 0.114 0.886 20 H 0.133 0.867 21 H 0.138 0.862 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.551 -1.603 -3.769 7.726 hybrid contribution 0.637 1.053 0.722 1.427 sum -5.913 -0.550 -3.047 6.675 Atomic orbital electron populations 1.22287 0.87795 1.06230 1.06961 1.27403 0.97650 0.93648 0.74471 1.90616 1.70829 1.35083 1.43729 1.85601 1.02879 1.11737 1.84225 1.22911 0.93699 1.00359 1.02489 1.19361 0.90186 0.94486 0.93815 1.20451 1.37771 1.02586 0.93289 0.91151 1.25625 0.93572 0.98292 0.98926 1.70082 1.42315 1.29604 1.11950 0.85628 0.78981 0.79856 0.77712 1.20026 1.21424 1.18630 1.23278 0.97379 0.99986 0.99152 1.22823 1.08624 0.93635 0.78872 0.84156 1.92662 1.94797 1.75587 1.55641 0.88617 0.86725 0.86171 0.91818 0.91884 0.92771 0.90439 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 10.23 71.24 0.73 -3.16 15 2 C 0.30 10.62 7.33 71.24 0.52 11.14 15 3 O -0.52 -22.46 16.66 -3.18 -0.05 -22.51 15 4 S -0.08 -3.27 20.75 -56.49 -1.17 -4.45 15 5 C -0.05 -2.15 4.90 71.98 0.35 -1.80 15 6 C 0.02 1.11 1.65 -52.93 -0.09 1.02 15 7 C -0.50 -24.94 7.54 25.60 0.19 -24.74 15 8 H 0.07 3.44 7.82 -2.91 -0.02 3.42 15 9 C 0.04 1.93 5.40 84.66 0.46 2.39 15 10 N -0.90 -48.62 12.90 21.45 0.28 -48.34 15 11 Si 0.95 40.24 29.54 68.60 2.03 42.27 15 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 13 H -0.29 -12.24 7.11 99.48 0.71 -11.54 15 14 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 15 C -0.16 -7.09 9.43 30.60 0.29 -6.80 15 16 C 0.00 -0.16 7.54 30.60 0.23 0.07 15 17 H 0.14 5.29 8.14 -2.39 -0.02 5.27 15 18 F -0.21 -8.72 16.54 44.97 0.74 -7.98 15 19 H 0.10 2.00 8.12 -2.39 -0.02 1.98 15 20 H 0.11 2.22 8.14 -2.39 -0.02 2.21 15 21 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.06 2.98 7.17 -2.39 -0.02 2.96 15 23 H 0.06 3.30 8.13 -2.39 -0.02 3.28 15 24 H 0.26 13.65 8.32 -92.70 -0.77 12.88 15 25 H 0.08 3.40 8.14 -2.39 -0.02 3.39 15 26 H 0.09 4.34 8.14 -2.39 -0.02 4.32 15 Total: -1.00 -58.89 252.01 5.68 -53.21 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.17 Total: 9.69 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 2.69 Total: -21.89 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.28 Total: -48.34 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.74 Total: -7.98 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -1.17 Total: -4.45 kcal Total: -58.89 5.68 -53.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261508241.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.380 kcal (2) G-P(sol) polarization free energy of solvation -58.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds