Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47060 * 240.00093 * 3 2 1 5 5 H 1.48503 * 109.46960 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47425 * 119.99898 * 3 2 1 7 7 C 1.38810 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00427 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00115 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.45590 * 32.39548 * 10 9 7 12 12 C 1.51402 * 110.62395 * 269.71872 * 10 9 7 13 13 O 1.21284 * 126.44543 * 61.27411 * 12 10 9 14 14 N 1.34370 * 107.10997 * 241.29611 * 12 10 9 15 15 C 1.39530 * 112.25303 * 0.02562 * 14 12 10 16 16 C 1.39366 * 130.83051 * 179.97438 * 15 14 12 17 17 C 1.37941 * 120.13276 * 180.02562 * 16 15 14 18 18 C 1.38303 * 120.37561 * 0.25919 * 17 16 15 19 19 C 1.38399 * 119.82233 * 359.44610 * 18 17 16 20 20 C 1.37679 * 119.91708 * 0.58692 * 19 18 17 21 21 H 0.96996 * 120.00437 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99840 * 0.02562 * 9 7 2 23 23 H 0.97000 * 123.87454 * 179.97438 * 14 12 10 24 24 H 1.08005 * 119.93272 * 0.02562 * 16 15 14 25 25 H 1.08002 * 119.80900 * 179.97438 * 17 16 15 26 26 H 1.08000 * 120.08621 * 179.74706 * 18 17 16 27 27 H 1.08006 * 120.03939 * 180.25786 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0027 11 1 2.9955 -3.5549 0.5498 12 6 2.3189 -4.1233 -1.4138 13 8 2.9637 -3.5380 -2.2580 14 7 1.7011 -5.3075 -1.5600 15 6 1.0423 -5.7069 -0.3967 16 6 0.2915 -6.8482 -0.1207 17 6 -0.2711 -7.0221 1.1266 18 6 -0.1001 -6.0653 2.1106 19 6 0.6493 -4.9323 1.8460 20 6 1.2113 -4.7559 0.6015 21 1 -0.4850 0.8400 -0.0004 22 1 0.3557 -2.3880 0.0016 23 1 1.7112 -5.8251 -2.3803 24 1 0.1499 -7.5979 -0.8852 25 1 -0.8523 -7.9083 1.3346 26 1 -0.5461 -6.2044 3.0843 27 1 0.7886 -4.1849 2.6131 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306156389.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = 17.302680 kcal Electronic energy + Delta-G solvation = -14056.194114 eV Core-core repulsion = 11586.506690 eV Total energy + Delta-G solvation = -2469.687425 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91681 -37.86068 -35.18298 -34.48887 -31.81587 -30.06080 -28.88506 -26.54251 -23.44799 -22.25764 -21.12689 -20.22467 -17.66051 -17.27326 -16.18887 -15.60856 -15.28757 -14.52024 -14.11898 -13.74435 -13.44842 -13.36186 -12.95961 -12.57644 -12.14635 -11.51450 -11.07675 -10.88356 -10.54903 -10.44733 -10.16262 -10.00227 -9.79637 -8.93283 -8.63657 -7.70854 -7.14526 -5.85867 -3.17996 1.47805 1.58755 3.07991 3.42254 3.47230 3.48024 3.50488 4.08198 4.55795 4.69526 5.09284 5.12089 5.22445 5.52378 5.56221 5.64181 5.77651 5.96006 6.18198 6.26726 6.37733 6.65283 6.79642 6.97415 7.23136 7.38355 7.66720 8.28051 8.60558 9.42040 9.85783 10.23950 11.35397 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037678 B = 0.008827 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.970241 B = 3171.354387 C = 3685.343691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.004 4.004 3 Si 0.914 3.086 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.687 5.687 10 C 0.188 3.812 11 H 0.101 0.899 12 C 0.499 3.501 13 O -0.498 6.498 14 N -0.672 5.672 15 C 0.155 3.845 16 C -0.155 4.155 17 C -0.089 4.089 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.139 4.139 21 H 0.259 0.741 22 H 0.392 0.608 23 H 0.398 0.602 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -14.093 3.256 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.744 3.256 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.073 3.927 11 H 0.118 0.882 12 C 0.284 3.716 13 O -0.369 6.369 14 N -0.316 5.316 15 C 0.057 3.943 16 C -0.177 4.177 17 C -0.108 4.108 18 C -0.172 4.172 19 C -0.067 4.067 20 C -0.143 4.143 21 H 0.069 0.931 22 H 0.227 0.773 23 H 0.235 0.765 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.170 -13.407 2.818 13.701 hybrid contribution -0.020 0.532 -0.685 0.867 sum 0.150 -12.875 2.133 13.051 Atomic orbital electron populations 1.69664 1.05241 1.26279 1.56356 1.24801 0.95569 0.97954 1.01767 0.86165 0.78547 0.82744 0.78126 1.20921 1.21574 1.20900 1.19288 0.91365 0.83319 1.44052 0.90501 1.42184 1.05849 0.98156 1.86537 1.19624 0.96484 0.86434 0.90160 0.88182 1.23033 0.76447 0.78550 0.93560 1.90696 1.38927 1.58026 1.49275 1.44125 1.51520 1.22809 1.13127 1.18251 0.94402 0.95169 0.86471 1.20274 1.02147 0.96935 0.98305 1.20761 0.98665 0.98944 0.92446 1.21012 1.01638 0.94882 0.99672 1.20374 0.94430 0.96721 0.95209 1.20336 1.02830 0.96797 0.94315 0.93144 0.77272 0.76547 0.86290 0.85878 0.85824 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 15 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 15 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 15 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.25 -7.05 9.96 -15.06 -0.15 -7.20 15 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 15 9 N -0.69 -17.56 5.17 -55.14 -0.29 -17.85 15 10 C 0.19 3.95 3.63 -69.68 -0.25 3.70 15 11 H 0.10 2.05 8.09 -51.93 -0.42 1.62 15 12 C 0.50 10.60 8.36 -10.82 -0.09 10.51 15 13 O -0.50 -12.36 18.03 5.55 0.10 -12.26 15 14 N -0.67 -11.20 5.88 -9.69 -0.06 -11.25 15 15 C 0.16 2.46 7.11 -83.69 -0.60 1.86 15 16 C -0.16 -1.97 10.07 -39.27 -0.40 -2.37 15 17 C -0.09 -1.03 10.02 -39.67 -0.40 -1.43 15 18 C -0.15 -1.91 10.07 -39.50 -0.40 -2.31 15 19 C -0.05 -0.74 10.04 -39.73 -0.40 -1.14 15 20 C -0.14 -2.43 5.87 -104.37 -0.61 -3.04 15 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 22 H 0.39 10.61 7.83 -40.82 -0.32 10.29 15 23 H 0.40 5.47 8.96 -40.82 -0.37 5.10 15 24 H 0.12 1.21 8.06 -52.48 -0.42 0.78 15 25 H 0.12 1.05 8.06 -52.49 -0.42 0.63 15 26 H 0.12 1.23 8.06 -52.49 -0.42 0.80 15 27 H 0.13 1.94 8.06 -52.48 -0.42 1.52 15 LS Contribution 246.88 15.07 3.72 3.72 Total: -1.00 -32.48 246.88 -6.55 -39.03 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.34 Total: 9.89 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.39 Total: -1.64 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.38 Total: -56.34 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.10 Total: -12.26 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.48 -6.55 -39.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306156389.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.333 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds