Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86797 * 120.00051 * 2 1 4 4 H 1.48503 * 109.47258 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47273 * 300.00048 * 3 2 1 6 6 H 1.48503 * 109.46882 * 60.00238 * 3 2 1 7 7 C 1.40054 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00460 * 160.99003 * 7 2 1 9 9 C 1.40700 * 119.99537 * 340.98846 * 7 2 1 10 10 C 1.46444 * 120.68334 * 329.38461 * 9 7 2 11 11 N 1.34311 * 133.87108 * 0.06856 * 10 9 7 12 12 C 1.30483 * 109.76017 * 179.97438 * 11 10 9 13 13 N 1.35850 * 109.93777 * 359.97438 * 12 11 10 14 14 H 0.97004 * 126.43942 * 180.02562 * 13 12 11 15 15 C 1.38127 * 107.13171 * 0.02562 * 13 12 11 16 16 C 1.38846 * 134.11239 * 180.39248 * 15 13 12 17 17 C 1.38380 * 120.95310 * 180.13306 * 16 15 13 18 18 C 1.37705 * 121.41577 * 359.44072 * 17 16 15 19 19 C 1.50697 * 119.92575 * 180.27227 * 18 17 16 20 20 O 1.42901 * 109.47533 * 0.02562 * 19 18 17 21 21 H 0.96999 * 119.99947 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.02939 * 180.02562 * 12 11 10 23 23 H 1.07992 * 119.52162 * 359.87669 * 16 15 13 24 24 H 1.08007 * 119.28774 * 179.71455 * 17 16 15 25 25 H 1.09000 * 109.47397 * 119.99894 * 19 18 17 26 26 H 1.09004 * 109.47405 * 240.00093 * 19 18 17 27 27 H 0.96693 * 114.00485 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3464 0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8833 2.3963 1.2126 7 6 2.0083 -1.2129 -0.0005 8 1 3.0441 -1.2383 -0.3052 9 6 1.3624 -2.3983 0.3959 10 6 0.2872 -2.3670 1.3896 11 7 -0.3019 -1.3862 2.0931 12 6 -1.2287 -1.8897 2.8614 13 7 -1.2887 -3.2364 2.6931 14 1 -1.8915 -3.8472 3.1453 15 6 -0.3302 -3.5726 1.7571 16 6 0.0765 -4.7663 1.1762 17 6 1.0968 -4.7918 0.2417 18 6 1.7366 -3.6384 -0.1541 19 6 2.8395 -3.7043 -1.1789 20 8 3.0331 -5.0609 -1.5839 21 1 -0.4850 0.8400 0.0004 22 1 -1.8557 -1.3201 3.5312 23 1 -0.4076 -5.6888 1.4608 24 1 1.3947 -5.7361 -0.1897 25 1 2.5666 -3.1022 -2.0456 26 1 3.7623 -3.3191 -0.7449 27 1 3.7295 -5.1787 -2.2443 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306553756.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = 16.698638 kcal Electronic energy + Delta-G solvation = -14336.011170 eV Core-core repulsion = 11866.297552 eV Total energy + Delta-G solvation = -2469.713618 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.42707 -36.84369 -34.95389 -33.58208 -31.32641 -29.68721 -28.21461 -25.46318 -23.99822 -21.56684 -20.16968 -19.49488 -17.77339 -16.67714 -15.72999 -15.37016 -14.77983 -14.04333 -13.95748 -13.54963 -13.16707 -12.81697 -12.19544 -11.71823 -11.56811 -11.21140 -10.88917 -10.56188 -10.35418 -9.98090 -9.66366 -9.28132 -9.15185 -9.00603 -8.32167 -7.01640 -6.79497 -6.58864 -4.29017 2.54788 2.99086 3.11555 3.15923 3.27159 3.95982 4.19730 4.31982 4.75499 5.10762 5.63944 5.70320 6.11029 6.27328 6.44569 6.60103 6.68878 6.88169 6.90318 7.05866 7.10736 7.46265 7.81424 7.91829 8.04090 8.19371 8.45788 8.53158 8.66196 8.76774 8.86353 9.55114 10.16702 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.015638 C = 0.009334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.613888 B = 1790.081877 C = 2999.071466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.082 3.918 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.440 4.440 8 H 0.085 0.915 9 C 0.181 3.819 10 C 0.004 3.996 11 N -0.423 5.423 12 C 0.144 3.856 13 N -0.613 5.613 14 H 0.402 0.598 15 C 0.080 3.920 16 C -0.281 4.281 17 C -0.012 4.012 18 C -0.265 4.265 19 C 0.157 3.843 20 O -0.578 6.578 21 H 0.284 0.716 22 H 0.186 0.814 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -1.687 0.838 1.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.103 0.897 9 C 0.177 3.823 10 C -0.118 4.118 11 N -0.140 5.140 12 C -0.138 4.138 13 N -0.225 5.225 14 H 0.238 0.762 15 C -0.031 4.031 16 C -0.304 4.304 17 C -0.032 4.032 18 C -0.269 4.269 19 C 0.081 3.919 20 O -0.382 6.382 21 H 0.095 0.905 22 H 0.203 0.797 23 H 0.101 0.899 24 H 0.121 0.879 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.161 -0.676 1.169 1.360 hybrid contribution -0.060 -0.186 0.072 0.209 sum 0.101 -0.862 1.241 1.515 Atomic orbital electron populations 1.69727 1.07878 1.29720 1.26430 1.25886 0.94599 1.01194 0.92767 0.86287 0.80950 0.81120 0.78537 1.18396 1.20100 1.19467 1.19530 0.98421 0.91499 1.37193 0.89676 1.17401 0.86968 0.91523 0.86431 1.19636 1.03222 0.86629 1.02353 1.69749 1.06449 1.31838 1.05967 1.24729 1.03009 0.80865 1.05228 1.42904 1.32962 1.08995 1.37627 0.76232 1.18864 0.92893 0.97482 0.93839 1.18896 1.08257 0.93040 1.10176 1.19971 0.92798 0.96913 0.93473 1.18881 1.07101 0.93327 1.07572 1.20409 0.95862 0.80337 0.95338 1.86450 1.59754 1.29081 1.62931 0.90539 0.79732 0.89895 0.87874 0.94239 0.94867 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.01 10.68 55.55 0.59 -18.41 15 2 C 0.08 2.09 5.00 -17.31 -0.09 2.00 15 3 Si 0.91 18.85 29.60 -169.99 -5.03 13.81 15 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.44 -11.61 8.39 -37.97 -0.32 -11.93 15 8 H 0.09 2.10 7.18 -52.49 -0.38 1.73 15 9 C 0.18 4.97 5.62 -104.72 -0.59 4.39 15 10 C 0.00 0.11 6.29 -82.69 -0.52 -0.41 15 11 N -0.42 -11.02 8.94 -10.60 -0.09 -11.11 15 12 C 0.14 3.06 12.98 -89.65 -1.16 1.90 15 13 N -0.61 -12.53 6.24 -11.75 -0.07 -12.61 15 14 H 0.40 6.40 8.96 -40.82 -0.37 6.03 15 15 C 0.08 1.99 7.30 -84.01 -0.61 1.37 15 16 C -0.28 -6.74 10.02 -39.30 -0.39 -7.14 15 17 C -0.01 -0.29 9.31 -39.72 -0.37 -0.66 15 18 C -0.27 -6.71 5.94 -103.88 -0.62 -7.33 15 19 C 0.16 3.34 6.31 36.00 0.23 3.57 15 20 O -0.58 -10.84 12.10 -35.23 -0.43 -11.26 15 21 H 0.28 6.87 8.30 -40.82 -0.34 6.53 15 22 H 0.19 3.00 8.06 -52.49 -0.42 2.58 15 23 H 0.08 1.77 8.06 -52.49 -0.42 1.35 15 24 H 0.10 2.34 6.93 -52.48 -0.36 1.98 15 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.03 0.68 7.82 -51.93 -0.41 0.27 15 27 H 0.36 4.67 9.12 45.56 0.42 5.08 15 LS Contribution 238.61 15.07 3.60 3.60 Total: -1.00 -32.16 238.61 -7.38 -39.54 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -1.50 Total: 10.68 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -4.44 Total: -14.24 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.43 Total: -42.13 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.43 Total: -11.26 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.16 -7.38 -39.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306553756.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.242 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds