Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86797 * 120.00051 * 2 1 4 4 H 1.48503 * 109.47258 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47273 * 300.00048 * 3 2 1 6 6 H 1.48503 * 109.46882 * 60.00238 * 3 2 1 7 7 C 1.40054 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00460 * 160.99003 * 7 2 1 9 9 C 1.40700 * 119.99537 * 340.98846 * 7 2 1 10 10 C 1.46444 * 120.68334 * 329.38461 * 9 7 2 11 11 N 1.34311 * 133.87108 * 0.06856 * 10 9 7 12 12 C 1.30483 * 109.76017 * 179.97438 * 11 10 9 13 13 N 1.35850 * 109.93777 * 359.97438 * 12 11 10 14 14 H 0.97004 * 126.43942 * 180.02562 * 13 12 11 15 15 C 1.38127 * 107.13171 * 0.02562 * 13 12 11 16 16 C 1.38846 * 134.11239 * 180.39248 * 15 13 12 17 17 C 1.38380 * 120.95310 * 180.13306 * 16 15 13 18 18 C 1.37705 * 121.41577 * 359.44072 * 17 16 15 19 19 C 1.50697 * 119.92575 * 180.27227 * 18 17 16 20 20 O 1.42901 * 109.47533 * 0.02562 * 19 18 17 21 21 H 0.96999 * 119.99947 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.02939 * 180.02562 * 12 11 10 23 23 H 1.07992 * 119.52162 * 359.87669 * 16 15 13 24 24 H 1.08007 * 119.28774 * 179.71455 * 17 16 15 25 25 H 1.09000 * 109.47397 * 119.99894 * 19 18 17 26 26 H 1.09004 * 109.47405 * 240.00093 * 19 18 17 27 27 H 0.96693 * 114.00485 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3464 0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8833 2.3963 1.2126 7 6 2.0083 -1.2129 -0.0005 8 1 3.0441 -1.2383 -0.3052 9 6 1.3624 -2.3983 0.3959 10 6 0.2872 -2.3670 1.3896 11 7 -0.3019 -1.3862 2.0931 12 6 -1.2287 -1.8897 2.8614 13 7 -1.2887 -3.2364 2.6931 14 1 -1.8915 -3.8472 3.1453 15 6 -0.3302 -3.5726 1.7571 16 6 0.0765 -4.7663 1.1762 17 6 1.0968 -4.7918 0.2417 18 6 1.7366 -3.6384 -0.1541 19 6 2.8395 -3.7043 -1.1789 20 8 3.0331 -5.0609 -1.5839 21 1 -0.4850 0.8400 0.0004 22 1 -1.8557 -1.3201 3.5312 23 1 -0.4076 -5.6888 1.4608 24 1 1.3947 -5.7361 -0.1897 25 1 2.5666 -3.1022 -2.0456 26 1 3.7623 -3.3191 -0.7449 27 1 3.7295 -5.1787 -2.2443 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306553756.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -5.871540 kcal Electronic energy + Delta-G solvation = -14336.989886 eV Core-core repulsion = 11866.297552 eV Total energy + Delta-G solvation = -2470.692334 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.21836 -38.54050 -36.62458 -35.42200 -33.14350 -31.49852 -30.04113 -27.28524 -25.78893 -23.37220 -21.96670 -21.30400 -19.60125 -18.26227 -17.55328 -17.12564 -16.52169 -15.74843 -15.65301 -15.26595 -14.94486 -14.58522 -13.93328 -13.49376 -13.26817 -12.88664 -12.68908 -12.27785 -12.08415 -11.77329 -11.44849 -11.01046 -10.93547 -10.74546 -10.15277 -8.87051 -8.65628 -8.43761 -6.20763 0.71885 1.18604 1.42008 1.55137 1.56555 2.24812 2.52319 2.56589 2.89211 3.61594 3.74114 4.12240 4.40045 4.55919 4.76817 4.88358 4.91845 5.05443 5.10424 5.23584 5.28489 5.65523 5.93820 6.08511 6.19282 6.37806 6.62484 6.88301 6.91355 7.12838 7.16263 7.74974 8.35830 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.015638 C = 0.009334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.613888 B = 1790.081877 C = 2999.071466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.043 3.957 3 Si 0.978 3.022 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.272 1.272 7 C -0.470 4.470 8 H 0.088 0.912 9 C 0.143 3.857 10 C -0.030 4.030 11 N -0.473 5.473 12 C 0.170 3.830 13 N -0.595 5.595 14 H 0.426 0.574 15 C 0.057 3.943 16 C -0.279 4.279 17 C -0.028 4.028 18 C -0.284 4.284 19 C 0.168 3.832 20 O -0.585 6.585 21 H 0.287 0.713 22 H 0.237 0.763 23 H 0.109 0.891 24 H 0.117 0.883 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -1.703 1.427 2.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.197 1.197 7 C -0.496 4.496 8 H 0.106 0.894 9 C 0.138 3.862 10 C -0.152 4.152 11 N -0.190 5.190 12 C -0.114 4.114 13 N -0.209 5.209 14 H 0.266 0.734 15 C -0.055 4.055 16 C -0.302 4.302 17 C -0.048 4.048 18 C -0.288 4.288 19 C 0.091 3.909 20 O -0.392 6.392 21 H 0.097 0.903 22 H 0.253 0.747 23 H 0.127 0.873 24 H 0.135 0.865 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.086 -0.744 1.743 1.897 hybrid contribution -0.081 -0.315 -0.033 0.327 sum -0.167 -1.060 1.710 2.018 Atomic orbital electron populations 1.69797 1.09309 1.30585 1.27763 1.26683 0.95265 1.04195 0.91872 0.85229 0.79670 0.76623 0.78599 1.17818 1.18814 1.19736 1.19743 0.98751 0.92346 1.38798 0.89385 1.17907 0.88129 0.92755 0.87393 1.20024 1.04063 0.88049 1.03035 1.69705 1.08678 1.32767 1.07895 1.25741 1.01144 0.81230 1.03260 1.42816 1.32242 1.09317 1.36531 0.73443 1.19059 0.94128 0.97144 0.95175 1.19256 1.07751 0.93861 1.09349 1.20218 0.93232 0.97275 0.94054 1.19397 1.08063 0.93165 1.08153 1.20159 0.94946 0.81461 0.94369 1.86370 1.61299 1.27430 1.64116 0.90254 0.74676 0.87338 0.86509 0.94524 0.94198 0.75969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.60 10.68 21.85 0.23 -40.36 15 2 C 0.04 2.21 5.00 85.29 0.43 2.64 15 3 Si 0.98 38.98 29.60 68.60 2.03 41.01 15 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 15 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 7 C -0.47 -25.40 8.39 23.31 0.20 -25.21 15 8 H 0.09 4.47 7.18 -2.91 -0.02 4.45 15 9 C 0.14 8.00 5.62 -19.93 -0.11 7.89 15 10 C -0.03 -1.68 6.29 41.42 0.26 -1.42 15 11 N -0.47 -24.48 8.94 -187.44 -1.68 -26.15 15 12 C 0.17 6.84 12.98 180.01 2.34 9.18 15 13 N -0.60 -22.98 6.24 -191.09 -1.19 -24.17 15 14 H 0.43 12.17 8.96 -92.71 -0.83 11.33 15 15 C 0.06 2.77 7.30 38.81 0.28 3.05 15 16 C -0.28 -13.16 10.02 22.45 0.23 -12.93 15 17 C -0.03 -1.37 9.31 22.18 0.21 -1.17 15 18 C -0.28 -14.55 5.94 -19.38 -0.12 -14.66 15 19 C 0.17 7.12 6.31 71.24 0.45 7.56 15 20 O -0.58 -21.12 12.10 -148.98 -1.80 -22.92 15 21 H 0.29 14.11 8.30 -92.71 -0.77 13.34 15 22 H 0.24 6.66 8.06 -2.91 -0.02 6.63 15 23 H 0.11 4.41 8.06 -2.91 -0.02 4.38 15 24 H 0.12 5.19 6.93 -2.91 -0.02 5.17 15 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.04 1.62 7.82 -2.38 -0.02 1.60 15 27 H 0.39 9.24 9.12 -74.06 -0.68 8.56 15 Total: -1.00 -70.46 238.61 1.47 -68.99 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.28 Total: 28.67 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.16 Total: -25.06 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.63 Total: -90.69 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.80 Total: -22.92 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -70.46 1.47 -68.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306553756.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.123 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds