Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47051 * 85.17763 * 3 2 1 5 5 H 1.48494 * 109.47116 * 205.17672 * 3 2 1 6 6 H 1.48502 * 109.47143 * 325.17857 * 3 2 1 7 7 C 1.40047 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00183 * 197.34243 * 7 2 1 9 9 C 1.40699 * 120.00053 * 17.34286 * 7 2 1 10 10 C 1.40766 * 120.68106 * 24.63579 * 9 7 2 11 11 C 1.37659 * 120.14349 * 179.75847 * 10 9 7 12 12 C 1.38425 * 121.41475 * 0.51287 * 11 10 9 13 13 C 1.50704 * 119.52047 * 179.77566 * 12 11 10 14 14 O 1.42897 * 109.47041 * 359.97438 * 13 12 11 15 15 C 1.38793 * 120.95931 * 359.74802 * 12 11 10 16 16 N 1.38130 * 134.11965 * 179.97438 * 15 12 11 17 17 H 0.97004 * 126.43304 * 359.97438 * 16 15 12 18 18 C 1.35854 * 107.13331 * 180.02562 * 16 15 12 19 19 N 1.30491 * 109.94322 * 359.97438 * 18 16 15 20 20 C 1.34315 * 109.76340 * 0.02562 * 19 18 16 21 21 H 0.97003 * 120.00315 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.92614 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.29129 * 180.26964 * 11 10 9 24 24 H 1.09005 * 109.46884 * 119.97503 * 13 12 11 25 25 H 1.09000 * 109.46889 * 239.97638 * 13 12 11 26 26 H 0.96706 * 113.99570 * 179.97438 * 14 13 12 27 27 H 1.07997 * 125.03339 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3876 2.1053 1.3952 5 1 3.5868 1.4129 -0.5956 6 1 1.4941 2.6211 -0.7995 7 6 2.0083 -1.2129 -0.0005 8 1 3.0514 -1.2343 0.2782 9 6 1.3528 -2.4035 -0.3643 10 6 0.2171 -2.3731 -1.1954 11 6 -0.4128 -3.5451 -1.5484 12 6 0.0391 -4.7722 -1.0943 13 6 -0.6860 -6.0284 -1.5034 14 8 -1.7881 -5.6888 -2.3473 15 6 1.1507 -4.8625 -0.2682 16 7 1.8217 -5.9114 0.3298 17 1 1.5983 -6.8528 0.2600 18 6 2.8526 -5.3770 1.0350 19 7 2.8541 -4.0784 0.9061 20 6 1.8345 -3.6990 0.1185 21 1 -0.4851 0.8400 0.0004 22 1 -0.1584 -1.4285 -1.5604 23 1 -1.2804 -3.5061 -2.1904 24 1 -0.0023 -6.6827 -2.0444 25 1 -1.0535 -6.5415 -0.6148 26 1 -2.3012 -6.4506 -2.6498 27 1 3.5660 -5.9430 1.6156 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306657274.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = 10.011330 kcal Electronic energy + Delta-G solvation = -14071.959496 eV Core-core repulsion = 11601.955895 eV Total energy + Delta-G solvation = -2470.003601 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64825 -36.80483 -35.52479 -33.50257 -31.87018 -29.39377 -28.00494 -26.60689 -23.48642 -21.45037 -20.83631 -19.55853 -17.92754 -16.83075 -15.96298 -15.23680 -15.00115 -14.46711 -14.31633 -13.63797 -13.09541 -12.91238 -12.55140 -11.83263 -11.39802 -11.21660 -11.13308 -10.60749 -10.22675 -10.01818 -9.84171 -9.73586 -9.22607 -9.05969 -8.72327 -7.07707 -6.99269 -6.77118 -4.30040 2.39005 2.96198 3.03927 3.10483 3.23505 3.85444 4.02849 4.10535 4.52517 4.85729 5.46350 5.62471 5.72535 5.98146 6.11093 6.26460 6.59290 6.75492 6.86598 6.95467 7.28566 7.54709 7.81247 7.91153 7.94755 8.11142 8.29674 8.51648 8.58018 8.72839 8.82988 9.29267 9.99576 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.010127 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.164485 B = 2764.269329 C = 3568.812396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.257 1.257 6 H -0.273 1.273 7 C -0.411 4.411 8 H 0.089 0.911 9 C 0.168 3.832 10 C -0.230 4.230 11 C -0.018 4.018 12 C -0.268 4.268 13 C 0.152 3.848 14 O -0.565 6.565 15 C 0.103 3.897 16 N -0.614 5.614 17 H 0.404 0.596 18 C 0.153 3.847 19 N -0.462 5.462 20 C -0.043 4.043 21 H 0.286 0.714 22 H 0.123 0.877 23 H 0.104 0.896 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.365 0.635 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -6.720 -1.282 6.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.198 1.198 7 C -0.438 4.438 8 H 0.107 0.893 9 C 0.164 3.836 10 C -0.251 4.251 11 C -0.038 4.038 12 C -0.274 4.274 13 C 0.075 3.925 14 O -0.368 6.368 15 C -0.007 4.007 16 N -0.227 5.227 17 H 0.240 0.760 18 C -0.130 4.130 19 N -0.181 5.181 20 C -0.164 4.164 21 H 0.097 0.903 22 H 0.140 0.860 23 H 0.122 0.878 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.210 0.790 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.417 -5.278 -0.758 5.348 hybrid contribution -0.542 -1.118 -0.280 1.273 sum -0.126 -6.395 -1.038 6.480 Atomic orbital electron populations 1.69858 1.07867 1.29931 1.31027 1.26146 0.94851 1.01946 0.92242 0.86150 0.80830 0.79701 0.79324 1.19250 1.18014 1.19771 1.19730 0.98465 0.90691 1.34951 0.89285 1.17888 0.90234 0.88103 0.87420 1.20894 1.01349 0.97016 1.05858 1.20171 0.96739 0.91045 0.95816 1.17465 1.01814 0.94031 1.14059 1.20448 0.86153 0.95342 0.90561 1.86554 1.44645 1.36180 1.69430 1.18382 0.96099 0.87726 0.98532 1.42830 1.27416 1.08021 1.44405 0.76038 1.24557 0.94854 0.90610 1.02938 1.69572 1.21474 1.09722 1.17289 1.19983 0.97602 0.93453 1.05361 0.90302 0.85962 0.87846 0.95782 0.95803 0.79019 0.79178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.47 10.96 55.55 0.61 -18.86 15 2 C 0.07 1.74 5.16 -17.31 -0.09 1.65 15 3 Si 0.92 18.46 29.59 -169.99 -5.03 13.43 15 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 5 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 15 7 C -0.41 -11.21 9.09 -37.97 -0.35 -11.56 15 8 H 0.09 2.42 7.90 -52.49 -0.41 2.00 15 9 C 0.17 4.72 5.73 -104.73 -0.60 4.12 15 10 C -0.23 -6.17 8.70 -38.84 -0.34 -6.51 15 11 C -0.02 -0.45 9.30 -39.72 -0.37 -0.82 15 12 C -0.27 -6.26 5.90 -104.35 -0.62 -6.88 15 13 C 0.15 2.80 7.36 36.01 0.27 3.06 15 14 O -0.56 -9.80 12.07 -35.23 -0.43 -10.22 15 15 C 0.10 2.44 6.98 -84.01 -0.59 1.86 15 16 N -0.61 -11.66 6.24 -11.75 -0.07 -11.74 15 17 H 0.40 5.86 8.96 -40.82 -0.37 5.49 15 18 C 0.15 2.99 12.98 -89.64 -1.16 1.82 15 19 N -0.46 -11.49 11.22 -10.59 -0.12 -11.61 15 20 C -0.04 -1.16 7.20 -82.69 -0.60 -1.76 15 21 H 0.29 6.50 8.30 -40.82 -0.34 6.16 15 22 H 0.12 3.32 6.17 -52.49 -0.32 2.99 15 23 H 0.10 2.44 6.91 -52.49 -0.36 2.08 15 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 15 26 H 0.37 4.10 9.12 45.56 0.42 4.52 15 27 H 0.19 2.69 8.06 -52.49 -0.42 2.26 15 LS Contribution 241.49 15.07 3.64 3.64 Total: -1.00 -32.17 241.49 -7.29 -39.46 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -1.45 Total: 10.92 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -4.44 Total: -15.01 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.42 Total: -42.21 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.43 Total: -10.22 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.17 -7.29 -39.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657274.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.468 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds