Wall clock time and date at job start Mon Mar 30 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47051 * 85.17763 * 3 2 1 5 5 H 1.48494 * 109.47116 * 205.17672 * 3 2 1 6 6 H 1.48502 * 109.47143 * 325.17857 * 3 2 1 7 7 C 1.40047 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00183 * 197.34243 * 7 2 1 9 9 C 1.40699 * 120.00053 * 17.34286 * 7 2 1 10 10 C 1.40766 * 120.68106 * 24.63579 * 9 7 2 11 11 C 1.37659 * 120.14349 * 179.75847 * 10 9 7 12 12 C 1.38425 * 121.41475 * 0.51287 * 11 10 9 13 13 C 1.50704 * 119.52047 * 179.77566 * 12 11 10 14 14 O 1.42897 * 109.47041 * 359.97438 * 13 12 11 15 15 C 1.38793 * 120.95931 * 359.74802 * 12 11 10 16 16 N 1.38130 * 134.11965 * 179.97438 * 15 12 11 17 17 H 0.97004 * 126.43304 * 359.97438 * 16 15 12 18 18 C 1.35854 * 107.13331 * 180.02562 * 16 15 12 19 19 N 1.30491 * 109.94322 * 359.97438 * 18 16 15 20 20 C 1.34315 * 109.76340 * 0.02562 * 19 18 16 21 21 H 0.97003 * 120.00315 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.92614 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.29129 * 180.26964 * 11 10 9 24 24 H 1.09005 * 109.46884 * 119.97503 * 13 12 11 25 25 H 1.09000 * 109.46889 * 239.97638 * 13 12 11 26 26 H 0.96706 * 113.99570 * 179.97438 * 14 13 12 27 27 H 1.07997 * 125.03339 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3876 2.1053 1.3952 5 1 3.5868 1.4129 -0.5956 6 1 1.4941 2.6211 -0.7995 7 6 2.0083 -1.2129 -0.0005 8 1 3.0514 -1.2343 0.2782 9 6 1.3528 -2.4035 -0.3643 10 6 0.2171 -2.3731 -1.1954 11 6 -0.4128 -3.5451 -1.5484 12 6 0.0391 -4.7722 -1.0943 13 6 -0.6860 -6.0284 -1.5034 14 8 -1.7881 -5.6888 -2.3473 15 6 1.1507 -4.8625 -0.2682 16 7 1.8217 -5.9114 0.3298 17 1 1.5983 -6.8528 0.2600 18 6 2.8526 -5.3770 1.0350 19 7 2.8541 -4.0784 0.9061 20 6 1.8345 -3.6990 0.1185 21 1 -0.4851 0.8400 0.0004 22 1 -0.1584 -1.4285 -1.5604 23 1 -1.2804 -3.5061 -2.1904 24 1 -0.0023 -6.6827 -2.0444 25 1 -1.0535 -6.5415 -0.6148 26 1 -2.3012 -6.4506 -2.6498 27 1 3.5660 -5.9430 1.6156 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306657274.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:58 Heat of formation + Delta-G solvation = -13.803873 kcal Electronic energy + Delta-G solvation = -14072.992201 eV Core-core repulsion = 11601.955895 eV Total energy + Delta-G solvation = -2471.036306 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.40753 -38.37323 -37.23286 -35.29193 -33.63509 -31.20008 -29.85660 -28.33428 -25.23709 -23.15447 -22.70295 -21.31158 -19.70722 -18.38848 -17.62220 -17.05103 -16.71375 -16.02588 -15.99464 -15.22071 -14.79814 -14.68381 -14.20710 -13.58540 -13.15128 -12.96240 -12.83173 -12.26448 -11.92680 -11.78417 -11.70808 -11.41813 -10.87759 -10.78983 -10.50612 -8.93282 -8.85413 -8.62637 -6.25417 0.58171 1.17823 1.37222 1.49290 1.55324 2.18719 2.34533 2.45322 2.65728 3.59356 3.68168 3.92468 4.25923 4.44712 4.65368 4.70350 4.74010 4.96419 5.02426 5.09331 5.46676 5.62773 5.90823 6.01825 6.14804 6.28140 6.62492 6.80017 6.85364 7.02770 7.09910 7.52402 8.21013 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.010127 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.164485 B = 2764.269329 C = 3568.812396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.250 4.250 11 C -0.038 4.038 12 C -0.258 4.258 13 C 0.157 3.843 14 O -0.584 6.584 15 C 0.084 3.916 16 N -0.592 5.592 17 H 0.431 0.569 18 C 0.198 3.802 19 N -0.521 5.521 20 C -0.077 4.077 21 H 0.295 0.705 22 H 0.106 0.894 23 H 0.111 0.889 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.394 0.606 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -9.059 -0.971 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.181 1.181 7 C -0.483 4.483 8 H 0.091 0.909 9 C 0.125 3.875 10 C -0.272 4.272 11 C -0.057 4.057 12 C -0.263 4.263 13 C 0.080 3.920 14 O -0.392 6.392 15 C -0.027 4.027 16 N -0.206 5.206 17 H 0.271 0.729 18 C -0.086 4.086 19 N -0.241 5.241 20 C -0.196 4.196 21 H 0.106 0.894 22 H 0.124 0.876 23 H 0.129 0.871 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.243 0.757 27 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.713 -7.682 -0.471 7.729 hybrid contribution -0.639 -0.745 -0.335 1.038 sum 0.074 -8.427 -0.807 8.466 Atomic orbital electron populations 1.69884 1.09197 1.31301 1.32034 1.26978 0.95623 1.04872 0.91139 0.85065 0.79095 0.75099 0.79688 1.18420 1.18328 1.18087 1.19775 0.98081 0.92267 1.38208 0.90891 1.18269 0.91283 0.89496 0.88480 1.20839 1.02194 0.97300 1.06880 1.20326 0.97256 0.91419 0.96709 1.18042 1.01097 0.95572 1.11615 1.20385 0.86811 0.92753 0.92096 1.86482 1.44759 1.38577 1.69356 1.18444 0.96573 0.88349 0.99325 1.42749 1.26293 1.08618 1.42935 0.72862 1.25797 0.93695 0.89544 0.99556 1.69559 1.22494 1.12620 1.19396 1.20293 0.98927 0.94200 1.06229 0.89399 0.87609 0.87116 0.93118 0.93483 0.75679 0.73112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.93 10.96 21.85 0.24 -42.69 15 2 C 0.03 1.66 5.16 85.28 0.44 2.10 15 3 Si 0.99 39.33 29.59 68.60 2.03 41.36 15 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 7 C -0.46 -26.51 9.09 23.31 0.21 -26.29 15 8 H 0.07 4.27 7.90 -2.91 -0.02 4.24 15 9 C 0.13 7.63 5.73 -19.93 -0.11 7.52 15 10 C -0.25 -14.22 8.70 22.75 0.20 -14.03 15 11 C -0.04 -1.91 9.30 22.18 0.21 -1.70 15 12 C -0.26 -11.72 5.90 -19.69 -0.12 -11.84 15 13 C 0.16 5.19 7.36 71.24 0.52 5.71 15 14 O -0.58 -18.49 12.07 -148.98 -1.80 -20.29 15 15 C 0.08 3.90 6.98 38.81 0.27 4.17 15 16 N -0.59 -20.15 6.24 -191.09 -1.19 -21.34 15 17 H 0.43 10.13 8.96 -92.71 -0.83 9.30 15 18 C 0.20 7.01 12.98 180.00 2.34 9.34 15 19 N -0.52 -25.61 11.22 -187.43 -2.10 -27.72 15 20 C -0.08 -4.23 7.20 41.41 0.30 -3.93 15 21 H 0.29 14.00 8.30 -92.71 -0.77 13.23 15 22 H 0.11 6.17 6.17 -2.91 -0.02 6.16 15 23 H 0.11 5.31 6.91 -2.91 -0.02 5.29 15 24 H 0.05 1.45 8.14 -2.38 -0.02 1.43 15 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 26 H 0.39 7.35 9.12 -74.05 -0.68 6.67 15 27 H 0.25 5.48 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -75.05 241.49 1.15 -73.90 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.28 Total: 25.72 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.26 Total: -28.95 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -3.06 Total: -91.75 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.80 Total: -20.29 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -75.05 1.15 -73.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306657274.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.097 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds